Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AZO_RS16990 Genome accession   NC_008702
Coordinates   3722791..3723273 (-) Length   160 a.a.
NCBI ID   WP_011767108.1    Uniprot ID   A1KAZ5
Organism   Azoarcus olearius     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3717791..3728273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZO_RS16975 (azo3382) - 3718505..3718960 (-) 456 WP_011767105.1 response regulator -
  AZO_RS16980 (azo3383) - 3719043..3721649 (-) 2607 WP_011767106.1 PAS domain-containing protein -
  AZO_RS16985 (azo3384) - 3721646..3722614 (-) 969 WP_011767107.1 ABC transporter substrate-binding protein -
  AZO_RS16990 (azo3385) ssb 3722791..3723273 (-) 483 WP_011767108.1 single-stranded DNA-binding protein Machinery gene
  AZO_RS16995 (azo3386) - 3723325..3724530 (-) 1206 WP_011767109.1 MFS transporter -
  AZO_RS17000 (azo3387) uvrA 3724646..3727483 (+) 2838 WP_011767110.1 excinuclease ABC subunit UvrA -
  AZO_RS17005 (azo3388) - 3727563..3727862 (+) 300 WP_011767111.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17708.57 Da        Isoelectric Point: 5.9703

>NTDB_id=27098 AZO_RS16990 WP_011767108.1 3722791..3723273(-) (ssb) [Azoarcus olearius]
MASVNKVILIGNLGADPESRFAPSGDAICNIRLATTENWRDKSTGERREATEWHRVSFYGKLAEIAGQYLRKGSQVYIEG
SLRTRKWQDQNGQERYTTEIRADEMKMLGRREGGDAPMRGGDDGYSAPAPRQQAAPAPASRPAPQRDSGGFGDFDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=27098 AZO_RS16990 WP_011767108.1 3722791..3723273(-) (ssb) [Azoarcus olearius]
ATGGCATCCGTCAACAAAGTCATTCTGATCGGCAACCTCGGCGCCGATCCGGAAAGCCGCTTCGCCCCCTCGGGCGATGC
GATCTGCAACATCCGTCTCGCGACGACCGAAAACTGGCGCGACAAGTCCACCGGAGAGCGCCGCGAAGCGACCGAGTGGC
ACCGGGTGTCGTTCTACGGCAAGCTCGCCGAAATCGCCGGCCAGTACTTGCGCAAGGGGAGCCAGGTCTATATCGAAGGC
AGCCTGCGCACGCGCAAGTGGCAGGACCAGAACGGCCAGGAGCGCTACACCACCGAGATCCGGGCCGACGAGATGAAGAT
GCTCGGCCGCCGCGAAGGTGGCGATGCGCCGATGCGCGGTGGGGACGACGGCTACAGCGCGCCCGCGCCACGCCAGCAGG
CCGCCCCTGCGCCCGCGTCGCGCCCGGCGCCGCAGCGCGATAGCGGCGGTTTCGGCGATTTCGACGACGACATCCCGTTC
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KAZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.191

100

0.631
  ssb Glaesserella parasuis strain SC1401

51.351

100

0.594
  ssb Neisseria meningitidis MC58

48.851

100

0.531
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.525

Multiple sequence alignment