Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C3Y93_RS10630 Genome accession   NZ_CP026616
Coordinates   2202618..2203841 (-) Length   407 a.a.
NCBI ID   WP_104853275.1    Uniprot ID   -
Organism   Acinetobacter sp. SWBY1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2197618..2208841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS10600 (C3Y93_10600) - 2197733..2198323 (-) 591 WP_104853273.1 hypothetical protein -
  C3Y93_RS10605 (C3Y93_10605) - 2198659..2199204 (-) 546 WP_004970127.1 glutathione peroxidase -
  C3Y93_RS10610 (C3Y93_10610) - 2199490..2200398 (+) 909 WP_104852885.1 DMT family transporter -
  C3Y93_RS10615 (C3Y93_10615) - 2200483..2200776 (-) 294 WP_228153765.1 hypothetical protein -
  C3Y93_RS10620 (C3Y93_10620) - 2200908..2201965 (+) 1058 Protein_2064 RNA-guided endonuclease InsQ/TnpB family protein -
  C3Y93_RS10625 (C3Y93_10625) - 2202000..2202569 (-) 570 WP_004970120.1 L-threonylcarbamoyladenylate synthase -
  C3Y93_RS10630 (C3Y93_10630) dprA 2202618..2203841 (-) 1224 WP_104853275.1 DNA-processing protein DprA Machinery gene
  C3Y93_RS10635 (C3Y93_10635) tsaP 2203859..2205016 (-) 1158 WP_070155503.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  C3Y93_RS10640 (C3Y93_10640) def 2205138..2205668 (+) 531 WP_004970115.1 peptide deformylase -
  C3Y93_RS10645 (C3Y93_10645) - 2205784..2206212 (+) 429 WP_104853276.1 DUF2946 family protein -
  C3Y93_RS10650 (C3Y93_10650) - 2206276..2208315 (+) 2040 WP_104852886.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45060.13 Da        Isoelectric Point: 6.6802

>NTDB_id=270914 C3Y93_RS10630 WP_104853275.1 2202618..2203841(-) (dprA) [Acinetobacter sp. SWBY1]
MLNSFSPQQINYILLWYLVQHSLSSFSKLVQHYGSVAAAVQPEHLLTWSDVRIHANHLQRAKEYLSPTGQLAFEQCLNQL
QQQCDFILTLDDADYPNQLRPYSNKPPILFGQGNAQALLQAQIAIVGSRKASPHGRQVAYDFAYYLSEQGFFINSGLAQG
IDEAAHQGALQHQRTIAVMGTGLDSTYPSAHHSLRQQIVECGGAVITEFLPQTKPLQQHFPRRNRIVSGLSLGVIVAEAS
LNSGSLITAKLAAEQGKLIFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVIEDLALPTQWQYQQNQIASSQNQTTAAST
KAKLSTPPTEAILQTTTTKTADTSTPHIPEHLLALYQQLDWVGQSIDHLAQQLNLDIATLTSALMELELMGFCLQQSGLY
LRCRPLK

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=270914 C3Y93_RS10630 WP_104853275.1 2202618..2203841(-) (dprA) [Acinetobacter sp. SWBY1]
ATGTTGAATTCATTCAGCCCACAGCAAATCAACTACATTTTGTTGTGGTATTTGGTTCAACATTCACTGTCTAGTTTTTC
CAAACTCGTACAACATTATGGTTCCGTGGCTGCCGCAGTGCAGCCCGAACACCTCCTCACATGGTCAGATGTGCGCATTC
ATGCCAACCATCTACAACGCGCCAAAGAATATCTCAGCCCAACAGGGCAACTCGCCTTTGAACAATGTCTGAATCAACTG
CAACAGCAGTGCGATTTTATTCTAACTTTGGACGATGCGGACTATCCCAATCAGTTACGACCCTATTCCAACAAGCCACC
CATTTTATTTGGGCAAGGCAATGCACAGGCTTTGTTGCAAGCGCAAATTGCGATTGTCGGCAGTCGCAAAGCCAGCCCGC
ATGGTCGGCAAGTGGCTTATGATTTTGCTTATTATTTAAGTGAACAAGGGTTCTTTATCAATAGTGGTTTGGCACAAGGT
ATTGATGAAGCCGCACATCAAGGTGCTTTGCAACATCAACGTACCATTGCAGTCATGGGCACAGGTTTGGACAGCACTTA
TCCAAGTGCACATCACAGCCTGCGCCAACAGATTGTGGAATGTGGTGGTGCCGTGATTACGGAGTTTTTACCACAGACTA
AGCCCTTACAGCAACATTTTCCACGACGTAACCGTATTGTCAGTGGACTAAGTTTAGGCGTGATTGTTGCTGAAGCCAGT
TTAAATAGTGGCTCGCTGATTACCGCGAAACTGGCAGCAGAGCAAGGCAAATTAATTTTTGCCATTCCAGGACATATTTA
CAGTGAATTTCATCAAGGTTGCCACCAATTGATTCGTGAAGGTGCAATTTTAGTGGATCATCCTGAACAAGTGATTGAAG
ATTTAGCCCTACCCACCCAATGGCAATATCAACAAAACCAAATAGCATCAAGCCAAAATCAGACTACAGCAGCTTCAACA
AAAGCAAAATTATCTACACCACCGACTGAAGCAATACTTCAAACCACCACAACAAAAACAGCAGATACAAGTACACCGCA
TATTCCCGAGCATTTATTGGCACTGTATCAACAACTGGATTGGGTCGGACAAAGCATCGATCACTTGGCACAGCAACTGA
ATTTAGATATTGCCACACTCACCAGCGCATTAATGGAACTGGAACTCATGGGCTTCTGTTTACAACAATCAGGTTTATAT
CTGCGTTGTCGTCCACTCAAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-286)

DprA winged helix domain (DprA_WH)

(353-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

62.129

99.263

0.617
  dprA Acinetobacter baumannii D1279779

61.634

99.263

0.612
  dprA Acinetobacter baylyi ADP1

58.416

99.263

0.58

Multiple sequence alignment