Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   C3Y93_RS10635 Genome accession   NZ_CP026616
Coordinates   2203859..2205016 (-) Length   385 a.a.
NCBI ID   WP_070155503.1    Uniprot ID   A0A1E8DZE1
Organism   Acinetobacter sp. SWBY1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2198859..2210016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS10610 (C3Y93_10610) - 2199490..2200398 (+) 909 WP_104852885.1 DMT family transporter -
  C3Y93_RS10615 (C3Y93_10615) - 2200483..2200776 (-) 294 WP_228153765.1 hypothetical protein -
  C3Y93_RS10620 (C3Y93_10620) - 2200908..2201965 (+) 1058 Protein_2064 RNA-guided endonuclease InsQ/TnpB family protein -
  C3Y93_RS10625 (C3Y93_10625) - 2202000..2202569 (-) 570 WP_004970120.1 L-threonylcarbamoyladenylate synthase -
  C3Y93_RS10630 (C3Y93_10630) dprA 2202618..2203841 (-) 1224 WP_104853275.1 DNA-processing protein DprA Machinery gene
  C3Y93_RS10635 (C3Y93_10635) tsaP 2203859..2205016 (-) 1158 WP_070155503.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  C3Y93_RS10640 (C3Y93_10640) def 2205138..2205668 (+) 531 WP_004970115.1 peptide deformylase -
  C3Y93_RS10645 (C3Y93_10645) - 2205784..2206212 (+) 429 WP_104853276.1 DUF2946 family protein -
  C3Y93_RS10650 (C3Y93_10650) - 2206276..2208315 (+) 2040 WP_104852886.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42120.31 Da        Isoelectric Point: 9.0905

>NTDB_id=270915 C3Y93_RS10635 WP_070155503.1 2203859..2205016(-) (tsaP) [Acinetobacter sp. SWBY1]
MKKVLTDTSSFRVLGFKKQVLALAVCLTVGLGAISVAEAAPARNINPPALKASAPNVYVVKKGDTLWDISKKFLNNPLRW
PEIWASNRHVKNPHWIFPGDRLLMCTYEGRPIIGKDEGDGCEGIIRRYAGKSTNLQPQIRVESLNNTIPVIPLDYIKHWL
ERSSIIAADALQGTPYILGTSDQRVLAAKGQSVYARGAGLEVGQRYGVYREGEPYMLTDANGQKFNAGIELTQVAAGIAV
RGENDITTLELTDTYNAEVRRGDRVLPIYDPMLPTLFYPTHAENVSTGGQVLRVMGSIGTAAKHSVVAIDRGTLHGVQSG
HVFSVAQKGEVVTDPKTKERVQLPGERIGNIMVFKSFDHISYAYVLDSELPIKVGASLQAPRMDD

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=270915 C3Y93_RS10635 WP_070155503.1 2203859..2205016(-) (tsaP) [Acinetobacter sp. SWBY1]
ATGAAAAAGGTTTTGACAGACACATCCTCTTTTCGTGTCTTGGGGTTTAAAAAGCAAGTTTTAGCACTCGCGGTATGTCT
CACAGTGGGACTTGGTGCGATCAGTGTGGCTGAAGCAGCACCTGCACGAAACATCAATCCGCCTGCCTTAAAAGCCAGCG
CACCAAATGTGTATGTGGTAAAAAAAGGCGATACCTTATGGGATATTTCCAAAAAATTCCTGAACAACCCATTACGTTGG
CCTGAAATTTGGGCAAGTAACCGTCACGTAAAAAATCCACACTGGATTTTCCCAGGTGACCGTTTGTTGATGTGTACCTA
CGAAGGTCGCCCTATTATTGGTAAAGATGAAGGCGATGGCTGTGAAGGCATTATTCGTCGTTATGCAGGCAAGAGCACCA
ATTTACAGCCGCAAATTCGCGTGGAGTCTTTAAATAATACCATTCCTGTGATTCCACTTGACTACATCAAACACTGGTTA
GAGCGCAGCAGCATTATTGCCGCAGATGCGTTACAAGGCACACCATATATTTTAGGTACTTCTGATCAACGTGTTTTAGC
TGCTAAAGGTCAAAGTGTGTATGCACGTGGTGCAGGTCTGGAAGTAGGTCAACGCTACGGTGTATATCGTGAAGGCGAAC
CGTACATGCTGACCGATGCCAATGGTCAAAAATTCAATGCAGGCATTGAACTCACTCAAGTTGCTGCAGGTATTGCAGTA
CGTGGTGAAAATGACATCACCACACTTGAATTGACCGATACCTACAATGCCGAAGTGCGTCGTGGTGATCGCGTCTTACC
AATTTATGACCCAATGCTGCCAACCTTGTTCTACCCAACGCATGCTGAAAATGTCAGCACAGGTGGTCAGGTGCTACGTG
TGATGGGTTCGATTGGTACTGCAGCAAAACACAGTGTTGTGGCAATTGATCGCGGTACATTACATGGCGTGCAATCTGGT
CATGTGTTTAGCGTAGCGCAAAAAGGCGAAGTGGTCACCGACCCGAAAACCAAAGAACGTGTTCAGCTTCCGGGCGAACG
TATTGGCAATATCATGGTCTTCAAGAGCTTTGACCACATTAGCTATGCCTATGTTTTAGACAGTGAATTACCAATTAAAG
TCGGTGCGAGCTTACAAGCACCACGAATGGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E8DZE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

64.935

100

0.649

Multiple sequence alignment