Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C3Y93_RS10465 Genome accession   NZ_CP026616
Coordinates   2172927..2173478 (+) Length   183 a.a.
NCBI ID   WP_004970192.1    Uniprot ID   A0AAV4YWP1
Organism   Acinetobacter sp. SWBY1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2167927..2178478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS10450 (C3Y93_10450) tenA 2169231..2169905 (-) 675 WP_104852873.1 thiaminase II -
  C3Y93_RS10455 (C3Y93_10455) - 2170210..2171295 (+) 1086 WP_004970195.1 DUF475 domain-containing protein -
  C3Y93_RS10460 (C3Y93_10460) - 2171511..2172875 (+) 1365 WP_104852874.1 MFS transporter -
  C3Y93_RS10465 (C3Y93_10465) ssb 2172927..2173478 (+) 552 WP_004970192.1 single-stranded DNA-binding protein Machinery gene
  C3Y93_RS10470 (C3Y93_10470) ahpC 2173717..2174280 (+) 564 WP_004970191.1 alkyl hydroperoxide reductase subunit C -
  C3Y93_RS10475 (C3Y93_10475) - 2174597..2175361 (+) 765 WP_416224605.1 pirin family protein -
  C3Y93_RS10480 (C3Y93_10480) - 2175785..2177092 (+) 1308 WP_004970183.1 FAD-dependent oxidoreductase -
  C3Y93_RS10485 (C3Y93_10485) - 2177390..2178220 (+) 831 WP_104852875.1 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20234.03 Da        Isoelectric Point: 6.4801

>NTDB_id=270911 C3Y93_RS10465 WP_004970192.1 2172927..2173478(+) (ssb) [Acinetobacter sp. SWBY1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSSNRGQSDQQDGGFAQPRFNNNQAPATGYANQNQGGFNQNQGGGYANNNPS
GFAPKPQAAPATAPADLDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=270911 C3Y93_RS10465 WP_004970192.1 2172927..2173478(+) (ssb) [Acinetobacter sp. SWBY1]
ATGCGTGGTGTAAATAAAGTCATTTTAGTGGGTACTTTAGGTCGTGATCCTGAAACAAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTTTCTATCGCAACCAGTGATGTCTGGACAGACAAAAACACAGGTGAGCGTAAAGAGCAAACAGAGTGGC
ATCGCATTGTTTTACATAACCGTTTAGGCGAGATTGCACAGCAATATTTACGCAAAGGTTCTAAAGTATATATTGAAGGT
TCATTGCGTACGCGTCAGTGGACCGATCAAAATGGTCAAGAGCGTTACACCACTGAAATTCGTGGTGATCAAATGCAAAT
GCTCGATTCTTCGAACCGTGGACAATCTGACCAGCAAGATGGTGGGTTTGCACAACCACGTTTTAACAATAACCAAGCTC
CAGCCACAGGTTATGCGAATCAAAATCAAGGCGGTTTTAACCAAAATCAGGGTGGCGGCTATGCCAACAATAACCCGAGT
GGTTTTGCACCGAAGCCACAAGCTGCGCCTGCAACTGCACCAGCAGATTTAGATGATGACTTGCCATTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.688

100

0.574
  ssb Vibrio cholerae strain A1552

46.809

100

0.481
  ssb Neisseria meningitidis MC58

39.894

100

0.41
  ssb Neisseria gonorrhoeae MS11

39.362

100

0.404

Multiple sequence alignment