Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   D0Z58_RS06950 Genome accession   NZ_CP031738
Coordinates   1329507..1330172 (-) Length   221 a.a.
NCBI ID   WP_002983685.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SP1336     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324507..1335172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Z58_RS06945 (D0Z58_06940) raiA 1328879..1329427 (-) 549 WP_002988974.1 ribosome-associated translation inhibitor RaiA -
  D0Z58_RS06950 (D0Z58_06945) comFC/cflB 1329507..1330172 (-) 666 WP_002983685.1 ComF family protein Machinery gene
  D0Z58_RS06955 (D0Z58_06950) comFA/cflA 1330144..1331469 (-) 1326 WP_002988971.1 DEAD/DEAH box helicase Machinery gene
  D0Z58_RS06960 (D0Z58_06955) - 1331524..1332156 (+) 633 WP_002988970.1 YigZ family protein -
  D0Z58_RS06965 (D0Z58_06960) cysK 1332284..1333225 (+) 942 WP_002988967.1 cysteine synthase A -
  D0Z58_RS06970 (D0Z58_06965) - 1333243..1333620 (-) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  D0Z58_RS06975 (D0Z58_06970) - 1333620..1335020 (-) 1401 WP_002983672.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25163.41 Da        Isoelectric Point: 9.4626

>NTDB_id=270750 D0Z58_RS06950 WP_002983685.1 1329507..1330172(-) (comFC/cflB) [Streptococcus pyogenes strain SP1336]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=270750 D0Z58_RS06950 WP_002983685.1 1329507..1330172(-) (comFC/cflB) [Streptococcus pyogenes strain SP1336]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412

Multiple sequence alignment