Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C3496_RS05220 Genome accession   NZ_CP026608
Coordinates   1021445..1021966 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus anthracis strain HDZK-BYSB7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1016445..1026966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3496_RS05200 (C3496_05440) rplI 1017655..1018101 (-) 447 WP_000864235.1 50S ribosomal protein L9 -
  C3496_RS05205 (C3496_05445) - 1018098..1020071 (-) 1974 WP_001113900.1 DHH family phosphoesterase -
  C3496_RS05210 (C3496_05450) - 1020150..1021085 (-) 936 WP_071730776.1 YybS family protein -
  C3496_RS05215 (C3496_05455) rpsR 1021166..1021399 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  C3496_RS05220 (C3496_05460) ssbA 1021445..1021966 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  C3496_RS05225 (C3496_05465) rpsF 1021993..1022283 (-) 291 WP_001233779.1 30S ribosomal protein S6 -
  C3496_RS05230 (C3496_05470) ychF 1022475..1023575 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  C3496_RS05235 (C3496_05475) - 1023691..1023888 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  C3496_RS05240 (C3496_05480) - 1023909..1024790 (-) 882 WP_071730778.1 mechanosensitive ion channel family protein -
  C3496_RS05245 (C3496_05485) yyaC 1025050..1025646 (+) 597 WP_001020726.1 spore protease YyaC -
  C3496_RS05250 (C3496_05490) spo0J 1025667..1026518 (-) 852 WP_080489262.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=270688 C3496_RS05220 WP_000981967.1 1021445..1021966(-) (ssbA) [Bacillus anthracis strain HDZK-BYSB7]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=270688 C3496_RS05220 WP_000981967.1 1021445..1021966(-) (ssbA) [Bacillus anthracis strain HDZK-BYSB7]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment