Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SAMA_RS02760 Genome accession   NC_008700
Coordinates   636101..636805 (+) Length   234 a.a.
NCBI ID   WP_011758636.1    Uniprot ID   A1S2X0
Organism   Shewanella amazonensis SB2B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 631101..641805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMA_RS02750 (Sama_0514) uvrA 631612..634440 (-) 2829 WP_011758634.1 excinuclease ABC subunit UvrA -
  SAMA_RS02755 (Sama_0515) - 634698..636065 (+) 1368 WP_011758635.1 MFS transporter -
  SAMA_RS02760 (Sama_0516) ssb 636101..636805 (+) 705 WP_011758636.1 single-stranded DNA-binding protein Machinery gene
  SAMA_RS02765 (Sama_0517) - 636932..637732 (-) 801 WP_011758637.1 3-hydroxybutyrate dehydrogenase -
  SAMA_RS02770 (Sama_0518) - 637952..638665 (+) 714 WP_041409653.1 CoA transferase subunit A -
  SAMA_RS02775 (Sama_0519) - 638675..639340 (+) 666 WP_011758639.1 CoA transferase subunit B -
  SAMA_RS02780 (Sama_0520) - 639484..640431 (+) 948 WP_011758640.1 PHB depolymerase family esterase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25465.72 Da        Isoelectric Point: 5.2341

>NTDB_id=27060 SAMA_RS02760 WP_011758636.1 636101..636805(+) (ssb) [Shewanella amazonensis SB2B]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDNQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYTTEIVVDQSGSMQMLGGRNQGQGQGAPMGGQSQGGQSQGGYSAPAQNQYAPAPQAAQPSYSAP
AQQPQQGGFQQPQQAQGGYGQQAPQQQGGYQSKPQQSAPAYQPQQAPQQRPAPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 705 bp        

>NTDB_id=27060 SAMA_RS02760 WP_011758636.1 636101..636805(+) (ssb) [Shewanella amazonensis SB2B]
ATGGCCAGTCGTGGTGTGAATAAAGTGATTCTGGTAGGTAACCTGGGGCAAGACCCTGAGGTGCGCTACATGCCCAACGG
CAATGCGGTAGCCAATATCACGGTCGCCACCAGCGAGTCCTGGAAGGACAACCAAGGTCAGCAGCAGGAGCGTACCGAAT
GGCACCGTGTGGTGATGTTTGGCAAGCTGGCTGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCTCAGGTTTACCTGGAA
GGCAAGCTGCAAACCCGTAAGTGGAAAGATCAGAGTGGTCAGGACAGATACACCACTGAAATCGTGGTGGACCAGAGCGG
CAGCATGCAGATGCTCGGCGGCCGCAACCAGGGCCAGGGCCAGGGCGCGCCAATGGGCGGTCAGTCACAGGGTGGCCAGT
CTCAGGGTGGTTACAGCGCACCTGCTCAAAACCAATACGCTCCAGCGCCGCAGGCCGCACAGCCAAGCTACAGCGCACCT
GCTCAGCAGCCACAGCAAGGTGGTTTCCAGCAGCCACAGCAGGCTCAGGGTGGTTATGGCCAGCAGGCGCCACAGCAGCA
GGGCGGTTATCAGAGCAAGCCTCAGCAGTCTGCTCCCGCTTACCAGCCACAACAGGCACCACAGCAGCGTCCAGCGCCTC
AGCCACAACAGCAGAACTACACTCCTGATCTGGATGACGGCTGGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1S2X0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.72

100

0.538
  ssb Glaesserella parasuis strain SC1401

45.299

100

0.453
  ssb Neisseria gonorrhoeae MS11

54.545

70.513

0.385
  ssb Neisseria meningitidis MC58

53.704

69.231

0.372

Multiple sequence alignment