Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PDEN_RS18935 Genome accession   NC_008687
Coordinates   942769..943281 (-) Length   170 a.a.
NCBI ID   WP_011750041.1    Uniprot ID   A1B8M8
Organism   Paracoccus denitrificans PD1222     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 937769..948281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDEN_RS18910 (Pden_3801) - 937889..938833 (+) 945 WP_011750036.1 ABC transporter permease -
  PDEN_RS18915 (Pden_3802) - 938830..939693 (+) 864 WP_011750037.1 ABC transporter permease -
  PDEN_RS18920 (Pden_3803) - 939693..941363 (+) 1671 WP_011750038.1 ABC transporter ATP-binding protein -
  PDEN_RS18925 (Pden_3804) - 941360..942220 (+) 861 WP_011750039.1 carbon-nitrogen hydrolase family protein -
  PDEN_RS18930 (Pden_3805) - 942233..942772 (+) 540 WP_011750040.1 carboxymuconolactone decarboxylase family protein -
  PDEN_RS18935 (Pden_3806) ssb 942769..943281 (-) 513 WP_011750041.1 single-stranded DNA-binding protein Machinery gene
  PDEN_RS18940 (Pden_3807) - 943514..944161 (+) 648 WP_011750042.1 lytic transglycosylase domain-containing protein -
  PDEN_RS18945 (Pden_3808) - 944224..944796 (-) 573 WP_011750043.1 YSC84-related protein -
  PDEN_RS18950 (Pden_3809) hemB 944867..945865 (-) 999 WP_041530413.1 porphobilinogen synthase -
  PDEN_RS18955 (Pden_3810) - 946017..946583 (+) 567 WP_041530414.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18166.72 Da        Isoelectric Point: 6.4874

>NTDB_id=27046 PDEN_RS18935 WP_011750041.1 942769..943281(-) (ssb) [Paracoccus denitrificans PD1222]
MAGSVNKVILVGNLGQDPEVRSFQNGGKVANLRIATSEQWKDRNTGERRERTEWHTVVIYSEPLVRVAEQFLKKGSKVYV
EGQLETRKWQDQSGNDRYSTEVALRPFRSELHMLDSRGGAGGGGGRDEGYGGGSYGGGSSGGSSSGGGYSSGGGGGQSQS
RPDFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=27046 PDEN_RS18935 WP_011750041.1 942769..943281(-) (ssb) [Paracoccus denitrificans PD1222]
ATGGCAGGCAGCGTGAACAAGGTGATCCTGGTCGGCAACCTGGGCCAAGACCCGGAGGTCCGCAGCTTCCAGAACGGCGG
CAAGGTCGCCAACCTGCGGATCGCCACCAGCGAGCAGTGGAAGGACCGCAACACCGGCGAGCGTCGCGAGCGCACGGAAT
GGCACACGGTGGTCATCTATTCCGAACCGCTGGTCCGCGTGGCCGAGCAATTCCTGAAAAAGGGCTCCAAGGTCTATGTC
GAAGGCCAGCTGGAAACCCGCAAATGGCAGGATCAGAGCGGCAACGACCGCTATTCGACCGAGGTCGCGCTGCGCCCCTT
CCGCAGCGAGTTGCATATGCTCGACAGCCGCGGCGGCGCGGGCGGCGGCGGCGGCCGCGATGAAGGCTATGGCGGCGGCA
GTTACGGCGGTGGCTCTTCCGGCGGCAGCTCGTCCGGGGGCGGATATTCCTCGGGCGGCGGTGGCGGCCAGTCGCAGAGC
CGCCCCGATTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1B8M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.568

100

0.524
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.524
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.418
  ssb Neisseria meningitidis MC58

39.106

100

0.412

Multiple sequence alignment