Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BKC06_RS23500 | Genome accession | NZ_CP026568 |
| Coordinates | 5253836..5254390 (-) | Length | 184 a.a. |
| NCBI ID | WP_024638200.1 | Uniprot ID | - |
| Organism | Pseudomonas syringae pv. syringae strain Pss9097 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5248836..5259390
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKC06_RS23475 (BKC06_023475) | - | 5249088..5249981 (+) | 894 | WP_054091767.1 | ABC transporter permease subunit | - |
| BKC06_RS23480 (BKC06_023480) | - | 5249978..5251084 (+) | 1107 | WP_024642448.1 | ABC transporter ATP-binding protein | - |
| BKC06_RS23485 (BKC06_023485) | - | 5251091..5251852 (+) | 762 | WP_024642449.1 | glycerophosphoryl diester phosphodiesterase | - |
| BKC06_RS23490 (BKC06_023490) | - | 5251849..5252592 (+) | 744 | WP_054091768.1 | inositol monophosphatase family protein | - |
| BKC06_RS23495 (BKC06_023495) | - | 5252592..5253704 (+) | 1113 | WP_024642450.1 | endo-1,4-beta-xylanase | - |
| BKC06_RS23500 (BKC06_023500) | ssb | 5253836..5254390 (-) | 555 | WP_024638200.1 | single-stranded DNA-binding protein | Machinery gene |
| BKC06_RS23505 (BKC06_023505) | - | 5254400..5255794 (-) | 1395 | WP_003400420.1 | MFS transporter | - |
| BKC06_RS23510 (BKC06_023510) | uvrA | 5255924..5258758 (+) | 2835 | WP_054091769.1 | excinuclease ABC subunit UvrA | - |
| BKC06_RS23515 (BKC06_023515) | bfr | 5258853..5259317 (-) | 465 | WP_003317095.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20492.60 Da Isoelectric Point: 5.9539
>NTDB_id=270314 BKC06_RS23500 WP_024638200.1 5253836..5254390(-) (ssb) [Pseudomonas syringae pv. syringae strain Pss9097]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGEKKEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQNYNQQPPQQRDS
RPAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGEKKEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQNYNQQPPQQRDS
RPAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 555 bp
>NTDB_id=270314 BKC06_RS23500 WP_024638200.1 5253836..5254390(-) (ssb) [Pseudomonas syringae pv. syringae strain Pss9097]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGAGCGGCGAGAAAAAAGAAAAAACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAACGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGTGGCAACTACAACCAGTCCGCGC
CTCGTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAGAACTACAATCAGCAGCCGCCACAACAGCGCGACTCG
CGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTTCTAG
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGAGCGGCGAGAAAAAAGAAAAAACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAACGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGTGGCAACTACAACCAGTCCGCGC
CTCGTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAGAACTACAATCAGCAGCCGCCACAACAGCGCGACTCG
CGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.216 |
100 |
0.565 |
| ssb | Glaesserella parasuis strain SC1401 |
49.189 |
100 |
0.495 |
| ssb | Neisseria meningitidis MC58 |
44.262 |
99.457 |
0.44 |
| ssb | Neisseria gonorrhoeae MS11 |
44.262 |
99.457 |
0.44 |