Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BKC06_RS03920 Genome accession   NZ_CP026568
Coordinates   833117..834454 (-) Length   445 a.a.
NCBI ID   WP_011266589.1    Uniprot ID   Q4ZYI2
Organism   Pseudomonas syringae pv. syringae strain Pss9097     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 828117..839454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKC06_RS03905 (BKC06_003905) - 828247..831456 (+) 3210 WP_054091785.1 pilus assembly protein -
  BKC06_RS03910 (BKC06_003910) - 831468..831875 (+) 408 WP_032620231.1 type IV pilin protein -
  BKC06_RS03915 (BKC06_003915) thiO 831901..833004 (+) 1104 WP_054091784.1 glycine oxidase ThiO -
  BKC06_RS03920 (BKC06_003920) pilR 833117..834454 (-) 1338 WP_011266589.1 sigma-54-dependent transcriptional regulator Regulator
  BKC06_RS03925 (BKC06_003925) pilS 834457..836049 (-) 1593 WP_024642307.1 sensor histidine kinase Regulator
  BKC06_RS03930 (BKC06_003930) - 836039..836278 (-) 240 WP_011266590.1 PP0621 family protein -
  BKC06_RS03935 (BKC06_003935) - 836399..837421 (-) 1023 WP_054091783.1 outer membrane protein assembly factor BamD -
  BKC06_RS03940 (BKC06_003940) rluD 837571..838533 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BKC06_RS03945 (BKC06_003945) pgeF 838530..839258 (+) 729 WP_054091782.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49737.68 Da        Isoelectric Point: 6.3796

>NTDB_id=270295 BKC06_RS03920 WP_011266589.1 833117..834454(-) (pilR) [Pseudomonas syringae pv. syringae strain Pss9097]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVNSALSLPGAQPTRSIDNRLLGDSLAMRTLRSQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQENDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=270295 BKC06_RS03920 WP_011266589.1 833117..834454(-) (pilR) [Pseudomonas syringae pv. syringae strain Pss9097]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGTAGTGCGCGTAACGTTGCCGAAGCCCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCGGACGGCAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATCCACGCGCTGAAGGCCGGAGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTGGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCGCAACCCACGCGCAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAGTCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGTGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGAGGCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAACTCATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTTAGCG
GTGCGCACGAAGACAAGCCTGGTCTGTTTCAGGCGGCGCACACCGGGACGCTGTTTCTCGATGAAGTCGCAGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCCGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCTGCCAGCCCTCAGGAGAACGACGGCCCGAGCCTGGCCGATATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCGGCGGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAAAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4ZYI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.201

99.551

0.769
  pilR Acinetobacter baumannii strain A118

48.608

100

0.51
  luxO Vibrio cholerae strain A1552

37.613

99.775

0.375

Multiple sequence alignment