Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BKC06_RS03925 Genome accession   NZ_CP026568
Coordinates   834457..836049 (-) Length   530 a.a.
NCBI ID   WP_024642307.1    Uniprot ID   A0AAJ4AXT4
Organism   Pseudomonas syringae pv. syringae strain Pss9097     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 829457..841049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKC06_RS03910 (BKC06_003910) - 831468..831875 (+) 408 WP_032620231.1 type IV pilin protein -
  BKC06_RS03915 (BKC06_003915) thiO 831901..833004 (+) 1104 WP_054091784.1 glycine oxidase ThiO -
  BKC06_RS03920 (BKC06_003920) pilR 833117..834454 (-) 1338 WP_011266589.1 sigma-54-dependent transcriptional regulator Regulator
  BKC06_RS03925 (BKC06_003925) pilS 834457..836049 (-) 1593 WP_024642307.1 sensor histidine kinase Regulator
  BKC06_RS03930 (BKC06_003930) - 836039..836278 (-) 240 WP_011266590.1 PP0621 family protein -
  BKC06_RS03935 (BKC06_003935) - 836399..837421 (-) 1023 WP_054091783.1 outer membrane protein assembly factor BamD -
  BKC06_RS03940 (BKC06_003940) rluD 837571..838533 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BKC06_RS03945 (BKC06_003945) pgeF 838530..839258 (+) 729 WP_054091782.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 57963.89 Da        Isoelectric Point: 6.9639

>NTDB_id=270296 BKC06_RS03925 WP_024642307.1 834457..836049(-) (pilS) [Pseudomonas syringae pv. syringae strain Pss9097]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQGALNLLGQEQLVGQIID
TCSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSAAPN
QKIHVDISPGTLTTRMDSGQLTQIMTNLVQNGLRYSGKNHPSAQVWLKLHNDQKSDLPTLEVLDDGPGVSEQHLSKMFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=270296 BKC06_RS03925 WP_024642307.1 834457..836049(-) (pilS) [Pseudomonas syringae pv. syringae strain Pss9097]
GTGACCGCTGACTCACCGTCCCTTGTCAGCCCGCAGGCACAGCGGATTCTACGGCTGTACCACCTCTACCGACTGACCAT
CGGCGTTGTACTGGTTCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTAGTCGTCGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGACGCGATCATGCTCTCCGCACTGTTCTACGCAGCCGGCGGGCCTTCCAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTGGCGATCAGCAACGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCCTCGGTTTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCCTTGTGCTTCGCCGCCGCCCTGCTGGTGCAGGCACTGACAGCGCGCATGCAGGTCAGCGAGGTGCTGGCCGAACAGCG
CGCGGCGGATGTCGACAGCCTTGAAGCACTCAACGCGCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAACCATCAGGTGCTGCTGGCCAATCAGGGGGCCTTGAACCTGCTGGGCCAGGAACAACTGGTCGGCCAGATCATCGAC
ACCTGCTCGCCACAACTGGTCGAACGCCTGCGCCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCATCACCACCGC
CCCCGTCGGGCTGGTGCTGCAACCGAGCTTTGCCACACTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATCGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCGCTGGGGCGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAACCCGCTGGGCGCCGTCAGTCATGCGGCGCAGTTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CTTGGGGCAGATCATTCATGAGCAGTCGGGACGCATTGATAGGGTCATCGAAAATGTCCTGCAGTTGTCACGCAGACGCG
AAGCGCAACCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCGCTGAATTTCGCAGTTCCGCTGCGCCCAAT
CAGAAGATTCATGTCGACATCAGCCCTGGCACGCTGACAACCCGCATGGATTCCGGACAACTGACGCAAATCATGACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGAATCATCCGTCAGCGCAGGTCTGGCTGAAACTACACAATGACCAGA
AGAGCGACCTGCCCACACTGGAAGTGCTGGACGACGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAAATGTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGTGAAAGCAATCAGGCGCATCT
GGAATACGCGCCCCGCCCCACGGGTGGCAGTTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.017

100

0.611

Multiple sequence alignment