Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BKM19_RS05350 Genome accession   NZ_CP026558
Coordinates   985719..987056 (-) Length   445 a.a.
NCBI ID   WP_060404386.1    Uniprot ID   -
Organism   Pseudomonas amygdali pv. morsprunorum strain R15244     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 980719..992056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM19_RS05320 (BKM19_005315) - 982926..984035 (-) 1110 WP_060404387.1 efflux RND transporter periplasmic adaptor subunit -
  BKM19_RS05325 (BKM19_005320) - 984117..984734 (-) 618 WP_002551994.1 TetR/AcrR family transcriptional regulator -
  BKM19_RS05350 (BKM19_005345) pilR 985719..987056 (-) 1338 WP_060404386.1 sigma-54-dependent transcriptional regulator Regulator
  BKM19_RS05355 (BKM19_005350) pilS 987059..988651 (-) 1593 WP_060404385.1 two-component system sensor histidine kinase NtrB Regulator
  BKM19_RS05360 (BKM19_005355) - 988641..988880 (-) 240 WP_002551997.1 PP0621 family protein -
  BKM19_RS05365 (BKM19_005360) - 989010..990032 (-) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  BKM19_RS05370 (BKM19_005365) rluD 990182..991144 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BKM19_RS05375 (BKM19_005370) pgeF 991141..991869 (+) 729 WP_060404384.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49785.88 Da        Isoelectric Point: 6.6379

>NTDB_id=270236 BKM19_RS05350 WP_060404386.1 985719..987056(-) (pilR) [Pseudomonas amygdali pv. morsprunorum strain R15244]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGTQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQEHSGPSLADIDNLED
YLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=270236 BKM19_RS05350 WP_060404386.1 985719..987056(-) (pilR) [Pseudomonas amygdali pv. morsprunorum strain R15244]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATCCGCGAACTGCTGGAGATCACTCTGGGGCGCAT
GAAACTCGACACCCGATGCGCCCGCAATGTTGCCGAGGCCCACGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAATGGCCTTGAGCTGGTGCAGCATATCCAGCACGGCTACCCTCATGTGCCGGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATTAATGCGCTCAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGCTGCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCTTGCGCCCAGCCAGCCCGCAGCATCGACAGCC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAACCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAGCTTGTAGCGCGGCTGATCCACGAGCAGGGTCCGCGCATCGATAAACCGTT
CATACCGGTGAATTGCGGGGCCATTCCTTCCGAGCTGATGGAGAGTGAATTCTTTGGCCATCGCAAGGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCTGGTCTGTTTCAGGCGGCACATACCGGAACGCTGTTTCTCGACGAAGTGGCCGACCTGCCG
CTGGCCATGCAGGTAAAACTGTTGCGAGCCATCCAGGAAAAATCAATCCGCAGTGTAGGCAGCCAGCAAGAGCAGATTGT
GGACGTACGCATTCTGTGCGCCACGCACAAGAACCTTAATGCAGAGGTTGCGGCAGGCCGTTTCCGTCAGGATCTGTATT
ACCGGTTGAACGTGATCGAAGTGCGCGTCCCCTCATTGCGCGAGCGGCGCGAGGACATCGATCAACTGGCAGCCAGTGTT
CTAAAGCGACTTGCTGGCAATGGCACGCAACCGGTGGCGCGCCTGAATGCGCAGGCGCTGGAGACGCTGAAGAGCTACCG
ATTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGTGAAAACGATGAAATCCATGCCA
GCGACCTGCGCCTTGCAGAGTCCGCCAGCCCCCAGGAGCACAGCGGTCCTAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTCGAAAGCATCGAGCGCAAGCTGATTCTGCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCAGCGGCAGAAAG
GCTCAGCTTGTCCTTCAGATCGCTGCGTTACCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.928

99.775

0.778
  pilR Acinetobacter baumannii strain A118

48.491

100

0.506
  luxO Vibrio cholerae strain A1552

37.387

99.775

0.373

Multiple sequence alignment