Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BKM19_RS05355 Genome accession   NZ_CP026558
Coordinates   987059..988651 (-) Length   530 a.a.
NCBI ID   WP_060404385.1    Uniprot ID   A0AB35R9E8
Organism   Pseudomonas amygdali pv. morsprunorum strain R15244     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 982059..993651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM19_RS05320 (BKM19_005315) - 982926..984035 (-) 1110 WP_060404387.1 efflux RND transporter periplasmic adaptor subunit -
  BKM19_RS05325 (BKM19_005320) - 984117..984734 (-) 618 WP_002551994.1 TetR/AcrR family transcriptional regulator -
  BKM19_RS05350 (BKM19_005345) pilR 985719..987056 (-) 1338 WP_060404386.1 sigma-54-dependent transcriptional regulator Regulator
  BKM19_RS05355 (BKM19_005350) pilS 987059..988651 (-) 1593 WP_060404385.1 two-component system sensor histidine kinase NtrB Regulator
  BKM19_RS05360 (BKM19_005355) - 988641..988880 (-) 240 WP_002551997.1 PP0621 family protein -
  BKM19_RS05365 (BKM19_005360) - 989010..990032 (-) 1023 WP_005733851.1 outer membrane protein assembly factor BamD -
  BKM19_RS05370 (BKM19_005365) rluD 990182..991144 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BKM19_RS05375 (BKM19_005370) pgeF 991141..991869 (+) 729 WP_060404384.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58102.95 Da        Isoelectric Point: 7.1674

>NTDB_id=270237 BKM19_RS05355 WP_060404385.1 987059..988651(-) (pilS) [Pseudomonas amygdali pv. morsprunorum strain R15244]
MTADTPSLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
SLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAAMLVQALTARMQVSEVLAEQRAADVDSLEELNALILQRMRTGILVLDANRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLVNPIMVPRSVTTSPIGPVLQPSFAALNRGDQRQTLIFLEDLSQITHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQSGRIDRVIANVLQLSRRREAQPELLDLKTWLEHFVTEFRSSAAPN
QSIHVDISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHLAKLFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=270237 BKM19_RS05355 WP_060404385.1 987059..988651(-) (pilS) [Pseudomonas amygdali pv. morsprunorum strain R15244]
GTGACCGCTGACACGCCCTCGCTTGCCAGCCCACAGGCGCAAAGGATTCTGCGGCTTTACCACCTTTATCGACTGACCAT
CGGCGTGGTACTGGTCCTGCTGATTTCCAGCAGTCTGGAAACCGAACTGTTGCAACTGGCCAATCCAAACCTGTTCCGCT
CGGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAGCGTCCCAGCCGTCAGGCGCAGCTATTC
AGTCTGGCAATGACTGACGCAATCATGCTCTCTGCGCTGTTCTACGCGGCGGGTGGCCCTTCCAGCGGCATCGGCAATCT
GTTGATTGCTTCCGTAGCAATCAGCAATGTATTGCTGCGGGGCCGTATCGGTTTGCTGATCGCCGCCGTTTCTGCCATCG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGTACACCGTCGGTTTCCAACGACTACGTGCAGGCTGGCTCTCTGGGT
GCCCTGTGCTTCGCCGCCGCAATGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAAGTGCTGGCCGAACAGCG
TGCAGCGGATGTCGACAGCCTTGAAGAACTCAACGCGCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTACTGGATG
CCAACCGTCAGGTGCTGCTGGCCAATCAAGGTGCCCTTACCCTACTGGGCCACGAGCGACTGGTCGGCCAGGTTATCGAC
GCTTACTCGCCGCAGTTGGTGGAACGCCTGCGCCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCGTCACGACTTC
ACCCATCGGGCCGGTGCTGCAACCGAGCTTTGCCGCACTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTTGAAG
ACCTGTCGCAGATTACCCATCAGGCGCAGCAGCTCAAGCTCGCCGCGCTGGGACGCCTGACCGCCGGGATTGCCCACGAG
ATACGCAACCCGCTGGGCGCAGTCAGCCATGCCGCACAGTTACTCAACGAATCTGAAGAACTCAGCGCAGCGGACCGACG
CCTGGGGCAGATCATTCATGACCAGTCGGGGCGTATTGATCGGGTCATCGCAAATGTTCTGCAATTGTCGCGCAGACGCG
AAGCGCAGCCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCACTGAATTTCGCAGTTCCGCTGCGCCCAAT
CAGTCGATTCATGTCGACATAAGCCCCGGCACGCTGACAACCCGCATGGATTCCGGGCAACTGACCCAGATCATGACCAA
CCTGCTACAGAACGGCCTGCGCTACAGCGGCAGAAATCATTCGTCAGCGCAGGTCTGGCTGAAGCTGCATCACGACCGAC
AAAGCGATTTGCCCATTCTGGAAGTACAGGACGACGGGCCAGGGGTCAGCGAGCAACATTTGGCCAAGCTGTTCGAGCCG
TTTTTCACCACGGAAAGCAAAGGCACCGGTCTTGGTCTATATCTGTCACGCGAGCTTTGCGAAAGCAATCAGGCGCACCT
GGAATACGTCCCGCGGCAAGGTGGCGGCAGTTGCCTGCGCATAACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.017

100

0.611

Multiple sequence alignment