Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C3438_RS09395 Genome accession   NZ_CP026533
Coordinates   1811193..1811711 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain DKU_NT_04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1806193..1816711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS09360 (C3438_09360) - 1806218..1807549 (+) 1332 WP_014419380.1 MFS transporter -
  C3438_RS09365 (C3438_09365) - 1807583..1807963 (-) 381 WP_017418442.1 VOC family protein -
  C3438_RS09370 (C3438_09370) - 1808020..1808958 (-) 939 WP_104843021.1 LacI family DNA-binding transcriptional regulator -
  C3438_RS22825 - 1809021..1809257 (-) 237 WP_022554059.1 endonuclease/exonuclease/phosphatase family protein -
  C3438_RS22830 - 1809205..1809351 (+) 147 Protein_1827 exodeoxyribonuclease III -
  C3438_RS22835 - 1809339..1809587 (-) 249 WP_022554060.1 endonuclease/exonuclease/phosphatase family protein -
  C3438_RS09380 (C3438_09380) - 1809584..1810141 (-) 558 WP_063636582.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  C3438_RS09385 (C3438_09385) - 1810138..1810719 (-) 582 WP_063636583.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  C3438_RS09390 (C3438_09390) rpsR 1810910..1811149 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  C3438_RS09395 (C3438_09395) ssbA 1811193..1811711 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  C3438_RS09400 (C3438_09400) rpsF 1811751..1812038 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  C3438_RS09405 (C3438_09405) ychF 1812150..1813250 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  C3438_RS09410 (C3438_09410) - 1813377..1815380 (-) 2004 WP_104843022.1 molybdopterin-dependent oxidoreductase -
  C3438_RS09415 (C3438_09415) - 1815427..1815633 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=270154 C3438_RS09395 WP_004392979.1 1811193..1811711(-) (ssbA) [Bacillus velezensis strain DKU_NT_04]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=270154 C3438_RS09395 WP_004392979.1 1811193..1811711(-) (ssbA) [Bacillus velezensis strain DKU_NT_04]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment