Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C3438_RS06695 Genome accession   NZ_CP026533
Coordinates   1287915..1288604 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain DKU_NT_04     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1282915..1293604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS06660 (C3438_06660) - 1283113..1283595 (-) 483 WP_031379255.1 flagellar protein FlgN -
  C3438_RS06665 (C3438_06665) flgM 1283610..1283876 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C3438_RS06670 (C3438_06670) - 1283946..1284365 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  C3438_RS06675 (C3438_06675) comFC 1284439..1285128 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  C3438_RS06680 (C3438_06680) - 1285134..1285418 (-) 285 WP_003151389.1 competence protein ComFB -
  C3438_RS06685 (C3438_06685) comFA 1285476..1286861 (-) 1386 WP_104842867.1 DEAD/DEAH box helicase Machinery gene
  C3438_RS06690 (C3438_06690) - 1286969..1287817 (-) 849 WP_003151387.1 DegV family protein -
  C3438_RS06695 (C3438_06695) degU 1287915..1288604 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C3438_RS06700 (C3438_06700) degS 1288681..1289844 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C3438_RS06705 (C3438_06705) - 1290067..1290714 (+) 648 WP_007614107.1 YigZ family protein -
  C3438_RS06710 (C3438_06710) - 1290719..1291912 (+) 1194 WP_104842868.1 LCP family protein -
  C3438_RS06715 (C3438_06715) - 1292012..1293088 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=270146 C3438_RS06695 WP_003219701.1 1287915..1288604(-) (degU) [Bacillus velezensis strain DKU_NT_04]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=270146 C3438_RS06695 WP_003219701.1 1287915..1288604(-) (degU) [Bacillus velezensis strain DKU_NT_04]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment