Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C3438_RS06685 Genome accession   NZ_CP026533
Coordinates   1285476..1286861 (-) Length   461 a.a.
NCBI ID   WP_104842867.1    Uniprot ID   -
Organism   Bacillus velezensis strain DKU_NT_04     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280476..1291861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS06650 (C3438_06650) flgL 1280651..1281568 (-) 918 WP_104842866.1 flagellar hook-associated protein FlgL -
  C3438_RS06655 (C3438_06655) flgK 1281580..1283097 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  C3438_RS06660 (C3438_06660) - 1283113..1283595 (-) 483 WP_031379255.1 flagellar protein FlgN -
  C3438_RS06665 (C3438_06665) flgM 1283610..1283876 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C3438_RS06670 (C3438_06670) - 1283946..1284365 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  C3438_RS06675 (C3438_06675) comFC 1284439..1285128 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  C3438_RS06680 (C3438_06680) - 1285134..1285418 (-) 285 WP_003151389.1 competence protein ComFB -
  C3438_RS06685 (C3438_06685) comFA 1285476..1286861 (-) 1386 WP_104842867.1 DEAD/DEAH box helicase Machinery gene
  C3438_RS06690 (C3438_06690) - 1286969..1287817 (-) 849 WP_003151387.1 DegV family protein -
  C3438_RS06695 (C3438_06695) degU 1287915..1288604 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C3438_RS06700 (C3438_06700) degS 1288681..1289844 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C3438_RS06705 (C3438_06705) - 1290067..1290714 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52578.00 Da        Isoelectric Point: 10.1372

>NTDB_id=270145 C3438_RS06685 WP_104842867.1 1285476..1286861(-) (comFA) [Bacillus velezensis strain DKU_NT_04]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQIPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVDVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=270145 C3438_RS06685 WP_104842867.1 1285476..1286861(-) (comFA) [Bacillus velezensis strain DKU_NT_04]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGTATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAATCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTCTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCGCCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTAGACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625

Multiple sequence alignment