Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C3438_RS06675 Genome accession   NZ_CP026533
Coordinates   1284439..1285128 (-) Length   229 a.a.
NCBI ID   WP_201741798.1    Uniprot ID   -
Organism   Bacillus velezensis strain DKU_NT_04     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1279439..1290128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS06640 (C3438_06640) fliW 1279530..1279961 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  C3438_RS06645 (C3438_06645) - 1279991..1280560 (-) 570 WP_017418818.1 DUF6470 family protein -
  C3438_RS06650 (C3438_06650) flgL 1280651..1281568 (-) 918 WP_104842866.1 flagellar hook-associated protein FlgL -
  C3438_RS06655 (C3438_06655) flgK 1281580..1283097 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  C3438_RS06660 (C3438_06660) - 1283113..1283595 (-) 483 WP_031379255.1 flagellar protein FlgN -
  C3438_RS06665 (C3438_06665) flgM 1283610..1283876 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C3438_RS06670 (C3438_06670) - 1283946..1284365 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  C3438_RS06675 (C3438_06675) comFC 1284439..1285128 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  C3438_RS06680 (C3438_06680) - 1285134..1285418 (-) 285 WP_003151389.1 competence protein ComFB -
  C3438_RS06685 (C3438_06685) comFA 1285476..1286861 (-) 1386 WP_104842867.1 DEAD/DEAH box helicase Machinery gene
  C3438_RS06690 (C3438_06690) - 1286969..1287817 (-) 849 WP_003151387.1 DegV family protein -
  C3438_RS06695 (C3438_06695) degU 1287915..1288604 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C3438_RS06700 (C3438_06700) degS 1288681..1289844 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25243.86 Da        Isoelectric Point: 8.0779

>NTDB_id=270144 C3438_RS06675 WP_201741798.1 1284439..1285128(-) (comFC) [Bacillus velezensis strain DKU_NT_04]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=270144 C3438_RS06675 WP_201741798.1 1284439..1285128(-) (comFC) [Bacillus velezensis strain DKU_NT_04]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment