Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   VIBHAR_RS12305 Genome accession   NC_009783
Coordinates   2643238..2643825 (-) Length   195 a.a.
NCBI ID   WP_012128243.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2638238..2648825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS12285 (VIBHAR_02624) - 2638385..2639647 (-) 1263 WP_012128239.1 DUF945 family protein -
  VIBHAR_RS12290 (VIBHAR_02625) - 2639833..2641773 (+) 1941 WP_012128240.1 ATP-binding protein -
  VIBHAR_RS12295 (VIBHAR_02626) - 2641770..2642267 (+) 498 WP_012128241.1 response regulator -
  VIBHAR_RS12300 (VIBHAR_02627) - 2642475..2643023 (+) 549 WP_012128242.1 hypothetical protein -
  VIBHAR_RS12305 (VIBHAR_02628) tfoX 2643238..2643825 (-) 588 WP_012128243.1 TfoX/Sxy family DNA transformation protein Regulator
  VIBHAR_RS12310 (VIBHAR_02629) - 2644196..2645116 (+) 921 WP_005529189.1 HDOD domain-containing protein -
  VIBHAR_RS12315 (VIBHAR_02630) - 2645224..2646129 (+) 906 WP_012128244.1 lysine exporter LysO family protein -
  VIBHAR_RS12320 (VIBHAR_02631) - 2646339..2646848 (+) 510 WP_012128245.1 hypothetical protein -
  VIBHAR_RS12325 (VIBHAR_02632) panP 2646973..2648619 (+) 1647 WP_012128246.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22303.55 Da        Isoelectric Point: 6.4656

>NTDB_id=26993 VIBHAR_RS12305 WP_012128243.1 2643238..2643825(-) (tfoX) [Vibrio campbellii ATCC BAA-1116]
MDMTDQAIFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDEEFTQLNCEKYKHVKKQTTATVNYYDV
TELFDSGFAGLDELLQKSINCSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVDTFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=26993 VIBHAR_RS12305 WP_012128243.1 2643238..2643825(-) (tfoX) [Vibrio campbellii ATCC BAA-1116]
ATGGACATGACAGACCAAGCTATTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTCGGCGGTAT
TGGTTTATTCAGCAACGACGCAATGTTTGCTCTGGTAAGTAACGACTGCTGTTACTTGCGCGGTGGCAATGGCCTCGATG
AAGAGTTTACTCAACTAAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACGGTAAATTATTACGATGTA
ACAGAATTGTTCGATTCCGGTTTTGCTGGGTTGGATGAGCTGCTACAAAAATCAATTAATTGTTCTATCAAGGAACGCAA
ATACCAAAAGTCTTCAGCCAGTAGACGTTTGCGTGATCTACCGAATATGCAGCTAACGCTAGAGCGTATGGTAAAGAAAG
CTGGTATTGATGACGTAGACACGTTTTTGGAGCTTGGCCCAGTAGAAGTCTTCAACAAAGTAAGAGTGGCATACGGCAGT
GATGTAGACGTTAAGCTGCTTTGGAAGTTTGCTGGTGCGATTGATGGTATCCATTGGAAACTGATCCAAGAACCACGCAA
GAAGCAGCTACTGGCTATGTGTGAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(11-99)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

99.487

100

0.995
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.282

100

0.913
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.912

98.974

0.682
  tfoX Vibrio cholerae strain A1552

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

58.639

97.949

0.574

Multiple sequence alignment