Detailed information NTG0269359

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: DD548_RS06905
• Genome accession: NZ_CP031673
• Coordinates: 1270231..1270917 (+)
• Length: 228 a.a.
• NCBI ID: WP_023604876.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain MOZ66
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1265231..1275917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DD548_RS06885 (DD548_06885)	-	1265343..1267973 (+)	2631	WP_000425353.1	valine--tRNA ligase	-
DD548_RS06890 (DD548_06890)	-	1267986..1269257 (+)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
DD548_RS06900 (DD548_06900)	-	1269527..1270234 (+)	708	WP_000261115.1	prepilin peptidase	-
DD548_RS06905 (DD548_06905)	ysxA/radC	1270231..1270917 (+)	687	WP_023604876.1	RadC family protein	Machinery gene
DD548_RS06910 (DD548_06910)	-	1270985..1271269 (+)	285	WP_000171859.1	hypothetical protein	-
DD548_RS06915 (DD548_06915)	-	1271386..1271583 (-)	198	WP_000025835.1	hypothetical protein	-
DD548_RS06920 (DD548_06920)	-	1271743..1272216 (+)	474	WP_001236735.1	DUF4930 family protein	-
DD548_RS06925 (DD548_06925)	-	1272290..1272409 (+)	120	WP_000840602.1	hypothetical protein	-
DD548_RS06930 (DD548_06930)	mreC	1272609..1273451 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
DD548_RS06935 (DD548_06935)	mreD	1273451..1273981 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
DD548_RS06940 (DD548_06940)	rplU	1274148..1274456 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
DD548_RS06945 (DD548_06945)	-	1274462..1274782 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
DD548_RS06950 (DD548_06950)	rpmA	1274794..1275078 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25341.31 Da
• Isoelectric Point: 7.0539

>NTDB_id=269359 DD548_RS06905 WP_023604876.1 1270231..1270917(+) (ysxA/radC) [Staphylococcus aureus strain MOZ66]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVTDYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=269359 DD548_RS06905 WP_023604876.1 1270231..1270917(+) (ysxA/radC) [Staphylococcus aureus strain MOZ66]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTACTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.232	98.246	0.513
radC	Streptococcus gordonii str. Challis substr. CH1	39.45	95.614	0.377
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373