Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C3F22_RS13590 Genome accession   NZ_CP026420
Coordinates   2774097..2774681 (-) Length   194 a.a.
NCBI ID   WP_104426724.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2769097..2779681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS13565 (C3F22_13575) - 2769221..2770528 (-) 1308 WP_004781572.1 FAD-dependent oxidoreductase -
  C3F22_RS13570 (C3F22_13580) - 2770942..2771820 (-) 879 WP_104426721.1 pirin family protein -
  C3F22_RS13575 (C3F22_13585) ahpC 2772066..2772629 (-) 564 WP_005232609.1 alkyl hydroperoxide reductase subunit C -
  C3F22_RS13580 (C3F22_13590) - 2772781..2773425 (-) 645 WP_104426722.1 TetR/AcrR family transcriptional regulator -
  C3F22_RS13585 (C3F22_13595) - 2773563..2773976 (+) 414 WP_104426723.1 hotdog fold domain-containing protein -
  C3F22_RS13590 (C3F22_13600) ssb 2774097..2774681 (-) 585 WP_104426724.1 single-stranded DNA-binding protein Machinery gene
  C3F22_RS13595 (C3F22_13605) - 2774733..2776097 (-) 1365 WP_034170221.1 MFS transporter -
  C3F22_RS13600 (C3F22_13610) - 2776222..2777280 (-) 1059 WP_004781556.1 RNA-guided endonuclease InsQ/TnpB family protein -
  C3F22_RS13605 (C3F22_13615) - 2777333..2778361 (-) 1029 WP_079255106.1 transposase -
  C3F22_RS13610 (C3F22_13620) - 2778569..2779660 (-) 1092 WP_004781554.1 DUF475 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21269.97 Da        Isoelectric Point: 6.4819

>NTDB_id=269240 C3F22_RS13590 WP_104426724.1 2774097..2774681(-) (ssb) [Acinetobacter sp. ACNIH1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQGDNGFNQPRFNNNNQGGGYSNNPQGGYGSAPQQGGFNNNQGSG
YGNNNQNNQGGYAPKSTPAPVAAPAADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=269240 C3F22_RS13590 WP_104426724.1 2774097..2774681(-) (ssb) [Acinetobacter sp. ACNIH1]
ATGCGTGGTGTTAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCTGAGACCAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGATTCATGGACTGATAAAAATACGGGCGAACGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTGCGCAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGATCAAAGCGGTCAAGAACGCTATACAACGGAAATCCGTGGTGAGCAAATGCAAAT
GCTGGATTCTGGTCGTCCACAAGGTGAGCAGGGCGATAACGGGTTTAACCAGCCACGTTTTAATAACAATAACCAGGGTG
GCGGTTATAGCAATAATCCACAAGGTGGTTATGGCTCAGCGCCTCAGCAAGGCGGTTTTAACAATAATCAAGGCAGTGGT
TATGGCAACAATAACCAAAATAACCAGGGTGGTTATGCGCCGAAGTCTACACCTGCTCCAGTAGCAGCACCGGCAGCCGA
TCTGGATGATGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.754

100

0.521
  ssb Vibrio cholerae strain A1552

43.5

100

0.448
  ssb Neisseria meningitidis MC58

38.86

99.485

0.387
  ssb Neisseria gonorrhoeae MS11

38.86

99.485

0.387

Multiple sequence alignment