Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C3F22_RS10455 Genome accession   NZ_CP026420
Coordinates   2134780..2135106 (-) Length   108 a.a.
NCBI ID   WP_104426507.1    Uniprot ID   A0A2L0I6S7
Organism   Acinetobacter sp. ACNIH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2126157..2143870 2134780..2135106 within 0
IScluster/Tn 2131818..2133853 2134780..2135106 flank 927


Gene organization within MGE regions


Location: 2126157..2143870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS10395 (C3F22_10405) - 2126157..2126477 (-) 321 WP_005234424.1 Arm DNA-binding domain-containing protein -
  C3F22_RS10410 (C3F22_10420) - 2129118..2129339 (+) 222 WP_104426503.1 kynureninase -
  C3F22_RS10415 (C3F22_10425) - 2129429..2130097 (-) 669 WP_228203541.1 hypothetical protein -
  C3F22_RS10425 (C3F22_10435) - 2131195..2131377 (-) 183 Protein_2012 terminase small subunit -
  C3F22_RS10430 (C3F22_10440) tnpA 2131438..2131821 (+) 384 WP_005094709.1 IS66-like element accessory protein TnpA -
  C3F22_RS10435 (C3F22_10445) tnpB 2131818..2132153 (+) 336 WP_004282310.1 IS66 family insertion sequence element accessory protein TnpB -
  C3F22_RS10440 (C3F22_10450) tnpC 2132228..2133853 (+) 1626 WP_104426504.1 IS66 family transposase -
  C3F22_RS10445 (C3F22_10455) - 2133972..2134277 (-) 306 WP_104426505.1 hypothetical protein -
  C3F22_RS10450 (C3F22_10460) - 2134404..2134658 (-) 255 WP_104426506.1 hypothetical protein -
  C3F22_RS10455 (C3F22_10465) ssb 2134780..2135106 (-) 327 WP_104426507.1 single-stranded DNA-binding protein Machinery gene
  C3F22_RS10460 (C3F22_10470) - 2135690..2137804 (-) 2115 WP_171284727.1 DUF3987 domain-containing protein -
  C3F22_RS10465 (C3F22_10475) - 2137797..2138201 (-) 405 WP_104426508.1 hypothetical protein -
  C3F22_RS10470 (C3F22_10480) - 2138204..2138485 (-) 282 WP_104426509.1 hypothetical protein -
  C3F22_RS18575 (C3F22_10485) - 2138607..2138915 (-) 309 WP_104426510.1 hypothetical protein -
  C3F22_RS10480 (C3F22_10490) - 2138925..2139293 (-) 369 WP_104426511.1 hypothetical protein -
  C3F22_RS10485 (C3F22_10495) - 2139283..2139792 (-) 510 WP_104426512.1 Bro-N domain-containing protein -
  C3F22_RS10490 (C3F22_10500) - 2139789..2140004 (-) 216 WP_104426513.1 helix-turn-helix domain-containing protein -
  C3F22_RS10495 (C3F22_10505) - 2140009..2140272 (-) 264 WP_228203542.1 hypothetical protein -
  C3F22_RS10500 (C3F22_10510) istA 2140370..2141389 (+) 1020 WP_104425964.1 IS21 family transposase -
  C3F22_RS10505 (C3F22_10515) istB 2141389..2142162 (+) 774 WP_075167882.1 IS21-like element ISAba8 family helper ATPase IstB -
  C3F22_RS10510 (C3F22_10520) - 2142159..2142563 (-) 405 WP_104426514.1 hypothetical protein -
  C3F22_RS10515 (C3F22_10525) - 2142566..2142781 (-) 216 WP_004815244.1 hypothetical protein -
  C3F22_RS10520 (C3F22_10530) - 2142911..2143870 (-) 960 WP_104426515.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12186.84 Da        Isoelectric Point: 10.2744

>NTDB_id=269231 C3F22_RS10455 WP_104426507.1 2134780..2135106(-) (ssb) [Acinetobacter sp. ACNIH1]
MPNVNKVTVMGVLGRDPETKQFPNGGSVTTFSVATTDFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYVEG
SLRTRKWKDGKGVDREVTEIRADELQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=269231 C3F22_RS10455 WP_104426507.1 2134780..2135106(-) (ssb) [Acinetobacter sp. ACNIH1]
ATGCCAAACGTAAACAAAGTAACTGTGATGGGTGTACTAGGCCGTGACCCTGAAACTAAGCAATTTCCCAACGGCGGAAG
CGTTACTACTTTCAGTGTAGCAACTACTGACTTCTGGAAGGACAAGACCACTGGCGAACGCAAAGAGGCCACAGAATGGC
ACAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTTTATGTTGAAGGC
TCATTACGTACAAGGAAGTGGAAGGATGGTAAAGGAGTAGATCGGGAAGTGACAGAGATTCGAGCTGATGAGCTGCAATT
GCTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0I6S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

58.333

100

0.583
  ssb Neisseria meningitidis MC58

50

98.148

0.491
  ssb Neisseria gonorrhoeae MS11

50

98.148

0.491
  ssb Vibrio cholerae strain A1552

54.639

89.815

0.491

Multiple sequence alignment