Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/comEC   Type   Machinery gene
Locus tag   C3F22_RS03485 Genome accession   NZ_CP026420
Coordinates   695331..697793 (+) Length   820 a.a.
NCBI ID   WP_104425884.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 690331..702793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS03460 (C3F22_03460) - 691330..691815 (+) 486 WP_004784649.1 YaiI/YqxD family protein -
  C3F22_RS03465 (C3F22_03465) - 691831..692724 (+) 894 WP_004784646.1 DMT family transporter -
  C3F22_RS03470 (C3F22_03470) - 692745..693308 (-) 564 WP_004784643.1 PilZ domain-containing protein -
  C3F22_RS03475 (C3F22_03475) - 693335..694570 (+) 1236 WP_004784642.1 lipoprotein-releasing ABC transporter permease subunit -
  C3F22_RS03480 (C3F22_03480) lolD 694563..695246 (+) 684 WP_104425883.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  C3F22_RS03485 (C3F22_03485) comA/comEC 695331..697793 (+) 2463 WP_104425884.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C3F22_RS03490 (C3F22_03490) - 697782..698756 (-) 975 WP_005236707.1 lysophospholipid acyltransferase family protein -
  C3F22_RS03495 (C3F22_03495) sppA 698884..699906 (+) 1023 WP_005236706.1 signal peptide peptidase SppA -
  C3F22_RS03500 (C3F22_03500) - 699903..700706 (+) 804 WP_005236704.1 alpha/beta fold hydrolase -
  C3F22_RS03505 (C3F22_03505) purN 700771..701400 (-) 630 WP_005236703.1 phosphoribosylglycinamide formyltransferase -
  C3F22_RS03510 (C3F22_03510) purM 701407..702477 (-) 1071 WP_005236701.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence


Protein


Download         Length: 820 a.a.        Molecular weight: 93730.29 Da        Isoelectric Point: 8.5437

>NTDB_id=269221 C3F22_RS03485 WP_104425884.1 695331..697793(+) (comA/comEC) [Acinetobacter sp. ACNIH1]
MLQWLCLGWILGLACMGKNFLNIHLNPITVIFLTVLCYLCGFKCNAILKKPLHKGLLVGTCILIGIFLGHGYANQQLSQR
LLNVEHEVQQKDIIVYVKRLNKLGDQSIQQPLEVLNLDGRTVTWMGFLSVNPLNTSQLSANHENLNTLELGQYYRLQGQV
RPNHSYATPGAFDAEKWALQQNVMAGFRIKQIEQLDSATVSTLGHSQYIREQRALTQQFLLWVEQKRLQLREFIAKQPVQ
NKGLLLALLTGDESLLNPATEQQFRRMGMSHLLAISGPHVLIFALMVCSVLRLFIARSMPQLYLRWPRQYFLALPFLFCV
VLYCAFVGFEIPAIRTLLICMIGVLLMLLRQNLQALKLLILSAALLLFIDPFSILSAAFWLSYGACFVLLRIYQTIQQRP
SEQNQTAIQKLYFAAKVLVESQWKIFLALFPLMMLFFKQIAWITPFSNLVAIPWIGLLIVPADILAAMIFFIAEPVSSML
FQLNDLLLNILLGFLNLLDHWFKPQLIPVAMNLWMIGLCILSLLILCLPRGVLPKSWIAVAAVPICIPQFYHPPFQLSVL
DVGQGQAIFLRHEIHNMMIDMGGYYDEEKFSIGKQVIMPFLSVQGVSQLDQLILTHLDQDHSGAYHSIKDQLKIQNIYAN
EVTDTATASNFQLCYQGQQWQWQNDLQIRVIAPKLEQLNTANFNKNDLSCVVYLQLKNAWPYQSFLLMGDAGWQTEYQLL
KDYPDLKVDVLVLGHHGSQHSSAYQFLQHYRPKLAIASAGRFNRYGHPSQLTQQRLKELDIPLLTTAEHGSLHFSQQGTQ
IILETERSRWKWLQKQNLTD

Nucleotide


Download         Length: 2463 bp        

>NTDB_id=269221 C3F22_RS03485 WP_104425884.1 695331..697793(+) (comA/comEC) [Acinetobacter sp. ACNIH1]
ATGTTGCAATGGCTGTGTCTGGGCTGGATTTTAGGTCTGGCCTGTATGGGAAAAAATTTCCTCAATATTCATTTAAATCC
AATAACAGTCATATTTCTCACAGTACTTTGCTATCTGTGTGGTTTTAAATGTAATGCGATTCTGAAAAAGCCCTTACATA
AAGGATTGCTGGTAGGCACCTGCATTCTAATCGGGATATTTTTGGGACATGGTTATGCCAATCAACAGCTCAGCCAACGG
CTATTAAATGTTGAGCATGAAGTACAGCAAAAAGACATTATCGTTTATGTTAAACGCTTGAATAAACTCGGTGATCAATC
TATACAGCAGCCTTTGGAAGTATTAAACCTCGATGGACGCACCGTGACCTGGATGGGTTTTCTATCTGTAAATCCTCTCA
ATACTTCACAACTATCAGCGAATCATGAAAATTTAAATACGCTTGAACTGGGTCAGTATTACCGGCTGCAAGGTCAGGTA
CGTCCTAATCACAGTTATGCAACGCCCGGTGCTTTTGATGCTGAAAAATGGGCACTGCAACAGAATGTGATGGCCGGTTT
CCGGATCAAGCAGATAGAGCAACTTGATTCAGCTACTGTTTCTACACTGGGGCATAGTCAGTATATTCGAGAGCAAAGAG
CTTTAACTCAGCAATTTCTACTTTGGGTAGAACAAAAACGGCTGCAATTAAGAGAGTTCATAGCAAAGCAACCTGTACAA
AATAAAGGTCTGCTTCTGGCTTTGCTCACCGGAGATGAAAGCCTTTTAAATCCTGCAACTGAGCAGCAATTTCGACGTAT
GGGGATGAGTCACTTACTCGCGATTTCTGGCCCACATGTGCTGATCTTTGCCCTGATGGTCTGCTCCGTACTTCGATTAT
TCATTGCTCGAAGTATGCCTCAGCTTTATCTAAGATGGCCACGCCAGTATTTTCTGGCTTTGCCTTTTCTGTTTTGTGTG
GTGCTGTACTGTGCCTTTGTGGGTTTTGAAATCCCGGCAATCCGCACTCTGCTGATCTGTATGATTGGCGTTCTTCTCAT
GCTGCTCCGACAAAATCTGCAGGCTTTAAAACTTCTGATTCTGAGCGCTGCCTTACTGTTATTCATTGATCCCTTTAGTA
TCTTGTCCGCGGCTTTCTGGCTGTCCTATGGGGCTTGTTTTGTATTGCTCAGAATTTATCAGACCATTCAACAGCGACCA
TCCGAGCAAAATCAGACAGCAATACAAAAACTGTATTTTGCAGCTAAAGTGCTGGTGGAATCACAGTGGAAAATCTTTCT
CGCTTTATTTCCTTTAATGATGCTGTTTTTTAAGCAGATTGCTTGGATCACGCCGTTCAGCAATCTGGTCGCAATCCCTT
GGATCGGTCTGCTGATTGTACCGGCCGATATTCTGGCAGCGATGATATTTTTTATCGCTGAACCGGTGTCAAGCATGCTA
TTTCAGCTTAATGATCTGTTGCTGAATATCCTATTGGGCTTCTTAAATCTGCTGGATCACTGGTTTAAACCGCAGTTAAT
ACCAGTTGCGATGAATCTCTGGATGATTGGTCTATGCATCCTGTCTTTGCTGATTTTATGCTTACCACGTGGAGTATTAC
CAAAATCCTGGATAGCTGTCGCGGCGGTACCAATTTGTATTCCTCAATTCTATCATCCACCATTTCAGCTTTCAGTGCTG
GACGTCGGTCAAGGACAGGCGATATTCCTTCGTCATGAAATCCATAACATGATGATCGATATGGGCGGTTATTATGATGA
GGAAAAATTTAGTATTGGAAAGCAGGTAATCATGCCATTTCTGTCGGTACAGGGTGTTTCTCAACTGGATCAACTAATTT
TAACGCATCTGGATCAGGACCATAGTGGTGCTTATCACAGCATTAAAGACCAGCTCAAGATTCAGAATATCTATGCCAAT
GAAGTGACCGACACTGCAACCGCTTCAAACTTTCAATTATGTTATCAGGGACAGCAGTGGCAATGGCAGAATGATCTGCA
GATTAGGGTCATTGCACCAAAACTAGAACAATTAAATACCGCTAATTTCAATAAAAATGACCTGTCTTGTGTGGTCTATT
TGCAGCTCAAAAATGCCTGGCCTTATCAAAGTTTTCTGCTAATGGGAGATGCAGGTTGGCAGACTGAATATCAGTTACTC
AAAGACTATCCAGATTTAAAAGTGGATGTTTTGGTATTAGGCCATCATGGCAGTCAGCACAGTTCAGCTTATCAATTCTT
GCAGCATTATCGTCCTAAACTGGCGATTGCGTCTGCAGGAAGATTTAACCGTTATGGTCATCCAAGTCAGTTGACTCAAC
AGCGTCTCAAAGAATTGGATATTCCTTTATTGACTACAGCCGAGCATGGTAGTTTGCATTTCTCTCAGCAAGGAACTCAA
ATCATTCTAGAAACTGAAAGAAGTCGCTGGAAATGGTTACAAAAACAAAATCTAACTGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baylyi ADP1

48.36

100

0.485

  comA/comEC Acinetobacter baumannii D1279779

47.394

100

0.477

  comA/comEC Acinetobacter baumannii strain A118

46.667

100

0.47


Multiple sequence alignment