Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C3F36_RS08440 Genome accession   NZ_CP026406
Coordinates   1812241..1812810 (+) Length   189 a.a.
NCBI ID   WP_104452170.1    Uniprot ID   -
Organism   Aeromonas sp. ASNIH2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1807241..1817810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F36_RS23985 - 1807922..1808047 (+) 126 WP_010674215.1 hypothetical protein -
  C3F36_RS08430 (C3F36_08430) uvrA 1808164..1810992 (-) 2829 WP_039040117.1 excinuclease ABC subunit UvrA -
  C3F36_RS08435 (C3F36_08435) - 1811085..1811723 (-) 639 WP_010674213.1 LuxR C-terminal-related transcriptional regulator -
  C3F36_RS08440 (C3F36_08440) ssb 1812241..1812810 (+) 570 WP_104452170.1 single-stranded DNA-binding protein Machinery gene
  C3F36_RS08445 (C3F36_08445) - 1812972..1813742 (+) 771 WP_104452169.1 transporter substrate-binding domain-containing protein -
  C3F36_RS23990 (C3F36_08450) - 1813789..1813914 (-) 126 WP_257520123.1 hypothetical protein -
  C3F36_RS08455 (C3F36_08455) yjbD 1814208..1814492 (+) 285 WP_199769679.1 DUF3811 domain-containing protein -
  C3F36_RS08460 (C3F36_08460) - 1814885..1815094 (+) 210 WP_010675897.1 cold-shock protein -
  C3F36_RS08465 (C3F36_08465) - 1815272..1816657 (-) 1386 WP_010675898.1 ATP-binding protein -
  C3F36_RS08470 (C3F36_08470) - 1816665..1817387 (-) 723 WP_010675899.1 response regulator -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20829.18 Da        Isoelectric Point: 5.9247

>NTDB_id=269145 C3F36_RS08440 WP_104452170.1 1812241..1812810(+) (ssb) [Aeromonas sp. ASNIH2]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGGQGMGGQSSQGNWGQPQQSAPQQNMQRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=269145 C3F36_RS08440 WP_104452170.1 1812241..1812810(+) (ssb) [Aeromonas sp. ASNIH2]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGATACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAGCTCCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTGGTCGACAGCTT
CACCGGTGTGATGCAGATGCTGGGTGGCCGTCCGCAGGGCGGTGGCCAGGGCATGGGCGGCCAGTCATCCCAGGGCAACT
GGGGCCAGCCGCAACAGTCTGCACCGCAACAGAACATGCAACGTCCTGCTGCCCCGCAGCAGAACATGCAACCGCAAGGC
GGTTACGGCCGTCCGGCCCAGCAGCCGCAATCCGCCCCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGATAT
TCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.912

100

0.704
  ssb Glaesserella parasuis strain SC1401

54.011

98.942

0.534
  ssb Neisseria meningitidis MC58

46.809

99.471

0.466
  ssb Neisseria gonorrhoeae MS11

46.237

98.413

0.455

Multiple sequence alignment