Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C3F40_RS27835 Genome accession   NZ_CP026399
Coordinates   5266277..5266783 (-) Length   168 a.a.
NCBI ID   WP_000098523.1    Uniprot ID   -
Organism   Escherichia coli strain ECONIH4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 5261681..5277609 5266277..5266783 within 0


Gene organization within MGE regions


Location: 5261681..5277609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F40_RS27785 (C3F40_27785) - 5262558..5262749 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  C3F40_RS27790 (C3F40_27790) - 5262827..5263171 (-) 345 WP_098031474.1 hypothetical protein -
  C3F40_RS27795 (C3F40_27795) - 5263279..5263539 (-) 261 WP_032229698.1 hypothetical protein -
  C3F40_RS27800 (C3F40_27800) - 5263536..5264333 (-) 798 WP_104457586.1 DUF551 domain-containing protein -
  C3F40_RS27805 (C3F40_27805) - 5264336..5264617 (-) 282 WP_104457587.1 hypothetical protein -
  C3F40_RS27810 (C3F40_27810) - 5264619..5265032 (-) 414 WP_104457588.1 ead/Ea22-like family protein -
  C3F40_RS27815 (C3F40_27815) - 5265029..5265301 (-) 273 WP_104457589.1 antitoxin -
  C3F40_RS27820 (C3F40_27820) - 5265298..5265795 (-) 498 WP_104457590.1 hNH endonuclease -
  C3F40_RS27825 (C3F40_27825) - 5265792..5265956 (-) 165 WP_096965523.1 DUF2737 family protein -
  C3F40_RS27830 (C3F40_27830) - 5265967..5266263 (-) 297 WP_104457591.1 phage anti-RecBCD protein -
  C3F40_RS27835 (C3F40_27835) ssb 5266277..5266783 (-) 507 WP_000098523.1 single-stranded DNA-binding protein Machinery gene
  C3F40_RS27840 (C3F40_27840) - 5266780..5267247 (-) 468 WP_000018646.1 HNH endonuclease -
  C3F40_RS27845 (C3F40_27845) - 5267248..5267955 (-) 708 WP_104457592.1 Rad52/Rad22 family DNA repair protein -
  C3F40_RS32060 (C3F40_27850) - 5267964..5268152 (-) 189 Protein_5155 hypothetical protein -
  C3F40_RS31370 kil 5268149..5268262 (-) 114 WP_122986066.1 host cell division inhibitory peptide Kil -
  C3F40_RS27860 (C3F40_27860) - 5268255..5268401 (-) 147 WP_016246170.1 protease FtsH-inhibitory lysogeny factor CIII -
  C3F40_RS27865 (C3F40_27865) - 5268425..5269393 (-) 969 WP_104457594.1 cell envelope biogenesis protein TolA -
  C3F40_RS27870 (C3F40_27870) - 5269529..5271139 (+) 1611 WP_011787758.1 IS1634-like element ISSpu7 family transposase -
  C3F40_RS27875 (C3F40_27875) - 5271304..5271774 (-) 471 WP_000167595.1 hypothetical protein -
  C3F40_RS32065 - 5272322..5272428 (-) 107 Protein_5161 antitermination protein N -
  C3F40_RS27895 (C3F40_27895) - 5273170..5273856 (-) 687 WP_024186732.1 S24 family peptidase -
  C3F40_RS27900 (C3F40_27900) - 5273965..5274195 (+) 231 WP_000391959.1 YdaS family helix-turn-helix protein -
  C3F40_RS27905 (C3F40_27905) - 5274315..5274593 (+) 279 WP_104457595.1 lambda phage CII family protein -
  C3F40_RS27910 (C3F40_27910) - 5274628..5274774 (+) 147 WP_000166205.1 DUF2740 family protein -
  C3F40_RS27915 (C3F40_27915) - 5274767..5275666 (+) 900 WP_016063113.1 DNA replication protein O -
  C3F40_RS27920 (C3F40_27920) - 5275656..5277092 (+) 1437 WP_158649915.1 DnaB-like helicase C-terminal domain-containing protein -
  C3F40_RS27925 (C3F40_27925) - 5277169..5277609 (+) 441 WP_000736886.1 recombination protein NinB -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18761.06 Da        Isoelectric Point: 8.4877

>NTDB_id=269133 C3F40_RS27835 WP_000098523.1 5266277..5266783(-) (ssb) [Escherichia coli strain ECONIH4]
MSSRGINKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI

Nucleotide


Download         Length: 507 bp        

>NTDB_id=269133 C3F40_RS27835 WP_000098523.1 5266277..5266783(-) (ssb) [Escherichia coli strain ECONIH4]
ATGAGTTCTCGCGGGATAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGACAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

61.017

100

0.643
  ssb Glaesserella parasuis strain SC1401

45.304

100

0.488
  ssb Neisseria meningitidis MC58

38.636

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.636

100

0.405

Multiple sequence alignment