Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C3F40_RS15065 Genome accession   NZ_CP026399
Coordinates   2798363..2798899 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain ECONIH4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2793363..2803899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F40_RS15040 (C3F40_15035) soxR 2795091..2795555 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  C3F40_RS15045 (C3F40_15040) soxS 2795641..2795964 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C3F40_RS15050 (C3F40_15045) pdeC 2795967..2797553 (-) 1587 WP_001548920.1 c-di-GMP phosphodiesterase PdeC -
  C3F40_RS15060 (C3F40_15055) yjcB 2797983..2798264 (+) 282 WP_001295689.1 YjcB family protein -
  C3F40_RS15065 (C3F40_15060) ssb 2798363..2798899 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C3F40_RS15070 (C3F40_15065) uvrA 2799153..2801975 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  C3F40_RS15075 (C3F40_15070) yjbR 2802010..2802366 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C3F40_RS15080 (C3F40_15075) yjbQ 2802370..2802786 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C3F40_RS15085 (C3F40_15080) aphA 2802897..2803610 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=269117 C3F40_RS15065 WP_000168305.1 2798363..2798899(-) (ssb) [Escherichia coli strain ECONIH4]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=269117 C3F40_RS15065 WP_000168305.1 2798363..2798899(-) (ssb) [Escherichia coli strain ECONIH4]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment