Detailed information NTG0269044

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C3F42_RS07545
• Genome accession: NZ_CP026386
• Coordinates: 1663894..1666104 (-)
• Length: 736 a.a.
• NCBI ID: WP_104444244.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PONIH3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1658894..1671104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3F42_RS07510 (C3F42_07510)	murB	1659234..1660253 (-)	1020	WP_104444242.1	UDP-N-acetylmuramate dehydrogenase	-
C3F42_RS07515 (C3F42_07515)	-	1660250..1660714 (-)	465	WP_038705674.1	low molecular weight protein-tyrosine-phosphatase	-
C3F42_RS07520 (C3F42_07520)	kdsB	1660714..1661478 (-)	765	WP_104444243.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C3F42_RS07525 (C3F42_07525)	-	1661475..1661660 (-)	186	WP_003247142.1	Trm112 family protein	-
C3F42_RS07530 (C3F42_07530)	lpxK	1661694..1662704 (-)	1011	WP_038705672.1	tetraacyldisaccharide 4'-kinase	-
C3F42_RS07535 (C3F42_07535)	-	1662704..1663138 (-)	435	WP_023632003.1	biopolymer transporter ExbD	-
C3F42_RS07540 (C3F42_07540)	exbB	1663135..1663770 (-)	636	WP_031315993.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C3F42_RS07545 (C3F42_07545)	comA	1663894..1666104 (-)	2211	WP_104444244.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C3F42_RS07550 (C3F42_07550)	-	1666249..1666896 (+)	648	WP_158659543.1	DUF2062 domain-containing protein	-
C3F42_RS07555 (C3F42_07555)	-	1666780..1667559 (-)	780	WP_023631459.1	ABC transporter permease	-
C3F42_RS07560 (C3F42_07560)	-	1667556..1668488 (-)	933	WP_104444245.1	ABC transporter ATP-binding protein	-
C3F42_RS07565 (C3F42_07565)	-	1668622..1669245 (-)	624	WP_104444246.1	glutathione S-transferase	-
C3F42_RS07570 (C3F42_07570)	-	1669646..1669885 (+)	240	WP_023631456.1	hypothetical protein	-
C3F42_RS07575 (C3F42_07575)	-	1669882..1670121 (+)	240	WP_023631455.1	DUF3077 domain-containing protein	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79732.56 Da
• Isoelectric Point: 11.1676

>NTDB_id=269044 C3F42_RS07545 WP_104444244.1 1663894..1666104(-) (comA) [Pseudomonas sp. PONIH3]
MRAGMLALVLGLLSLRFLPVLPPVGWLIPLLLLALACLRTRIWPLGWFVLGGCWACWSAQQALDDRLAPALDGRTLWLEG
RVVGLPTRTERGVRFELEHAESRRAQLPRRLQLSWFAGPELRAGERWRLAVNLRQPHGLLNPHGPDREALLLARGIGATG
SVKAGEQVGQAAVHWRDAVRQRLMNLDAHGREAALTALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARLGAWPSRWPWLPWACGLGMAAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAALPLLLALSGVLLINPL
ASLLPGFWLSFAAVGVLVLCFSARLGAWRPWQAWSRAQWVIAVGLLPVLLALGLPVSLTAPLANLLAVPWISFAVLPLAL
LGTATLPVAGVGEGLLWLAGLSLEGLFRLLAQLAGQLPAWLPEPLPLWAWLLVALGALLLLLPRGVPLRLPGAVMLLALW
APREQVPLGQVQVWQLDVGQGLAVLLRTRHHALLYDAGPAHGDSDLGESVVLPTLRRLGVRHLDLMLVSHGHADHAGGAA
AVRRGLPVTRVLAGEVAGLAPAALCESGERWRWDGVDFELWHWPQGTSSNDRSCVLRVVANGERLLLAGDMEAAAERAWL
AASEDPRIDWLQAPHHGSRTSSTEPFIKALAPRGVMISRGRNNGFGHPHAQVIERYRRHGVQVHDTALAGALELRLGRQG
AVVEGRAQRRFWREGE

Nucleotide

• Length: 2211 bp

>NTDB_id=269044 C3F42_RS07545 WP_104444244.1 1663894..1666104(-) (comA) [Pseudomonas sp. PONIH3]
ATGCGCGCAGGGATGCTGGCCCTGGTGCTCGGGCTGTTGAGCCTGCGCTTTTTGCCCGTTTTGCCGCCGGTCGGGTGGCT
GATTCCGTTGCTGTTGCTGGCCTTGGCCTGTCTGCGCACGCGGATCTGGCCGCTGGGCTGGTTCGTGCTGGGTGGCTGTT
GGGCCTGCTGGTCGGCGCAGCAGGCGCTGGATGATCGACTGGCCCCGGCGCTGGATGGCCGCACACTGTGGTTGGAGGGG
CGGGTGGTGGGGCTGCCGACTCGCACGGAGCGCGGCGTGCGTTTCGAGCTGGAGCATGCTGAGTCGCGCCGGGCGCAATT
GCCCAGGCGCCTGCAACTTAGCTGGTTTGCCGGGCCTGAATTGCGCGCCGGTGAGCGTTGGCGCCTGGCGGTGAACCTGC
GCCAGCCCCATGGGCTGCTCAACCCCCATGGCCCGGACCGCGAAGCATTGTTGTTGGCCCGGGGTATCGGCGCCACTGGC
TCGGTCAAGGCCGGCGAGCAGGTCGGGCAGGCTGCGGTGCATTGGCGCGATGCCGTGCGCCAGCGGTTGATGAACTTGGA
TGCCCATGGGCGCGAGGCGGCGCTGACGGCCCTGGTGCTGGGCGACGGCGCCGGGCTCGCGCGCGAGGATTGGCAGACCC
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCTGGCCAGCATATCGGGCTGTTGGCCGGGCTGGTGTACGGCCTG
GTCGCGGGCCTGGCGCGGTTGGGCGCCTGGCCATCGCGCTGGCCGTGGCTGCCCTGGGCTTGTGGCCTGGGCATGGCCGC
GGCATTGGGCTACGGCTGGCTGGCCGGCTTCGGCGTGCCGGTGCAACGGGCCTGCCTGATGCTGGCGGTGGTGTTGCTCT
GGCGCCTGCGCTTCAGGCACCTGGGGGCAGCCTTGCCGCTGCTGTTGGCGTTGTCGGGGGTGTTGCTGATCAATCCATTG
GCCAGTCTGCTGCCGGGTTTCTGGCTGTCATTTGCCGCGGTTGGCGTGCTGGTGCTGTGCTTCTCTGCCCGGCTCGGCGC
CTGGCGGCCCTGGCAGGCCTGGAGCCGCGCCCAGTGGGTAATCGCCGTGGGCCTGTTGCCGGTGCTGCTGGCGCTGGGGC
TGCCGGTCAGCCTGACGGCGCCGCTGGCCAACCTGCTGGCGGTGCCCTGGATCAGTTTCGCGGTGTTGCCCCTGGCCTTG
CTTGGTACGGCGACGTTGCCAGTGGCTGGGGTGGGGGAGGGGCTGCTGTGGCTGGCGGGGCTTTCGCTGGAGGGGCTGTT
TCGCCTGCTGGCGCAGCTTGCGGGGCAGTTGCCTGCATGGCTGCCCGAACCGTTGCCGCTGTGGGCCTGGCTGTTGGTCG
CGCTGGGCGCGCTGTTGTTGCTGCTGCCTCGGGGCGTGCCGTTGCGCTTGCCGGGCGCGGTGATGCTGCTGGCCTTGTGG
GCGCCGCGTGAGCAGGTGCCCCTTGGGCAGGTGCAGGTGTGGCAGCTGGATGTCGGCCAGGGCCTGGCGGTGCTGCTGCG
TACCCGTCATCACGCGCTGTTGTACGACGCCGGGCCTGCGCACGGGGACAGCGACCTGGGCGAGAGCGTGGTGCTGCCGA
CCTTGCGCAGGTTGGGGGTCAGGCACCTCGACCTGATGCTGGTCAGCCACGGTCACGCCGATCATGCCGGCGGGGCGGCG
GCGGTGCGCCGGGGGCTGCCGGTGACGCGGGTGCTGGCCGGGGAGGTTGCCGGGCTTGCGCCTGCCGCGCTGTGCGAAAG
TGGTGAGCGCTGGCGCTGGGATGGGGTCGATTTCGAGCTGTGGCATTGGCCGCAAGGCACGTCCAGCAACGACCGTTCCT
GCGTGCTGCGGGTGGTGGCCAATGGCGAGCGCCTGCTGCTGGCCGGCGACATGGAGGCCGCGGCGGAGCGGGCTTGGCTG
GCGGCCAGCGAGGATCCGCGTATCGACTGGCTGCAGGCGCCGCACCATGGCAGCCGCACGTCGTCCACCGAACCGTTCAT
CAAGGCGCTGGCGCCGCGCGGGGTGATGATTTCGCGGGGGAGGAACAACGGTTTCGGGCATCCGCATGCGCAGGTGATCG
AGCGCTATCGGCGCCATGGGGTGCAGGTGCATGACACGGCGCTGGCGGGCGCGCTGGAGTTGCGCCTGGGGCGCCAGGGT
GCGGTGGTGGAGGGGCGTGCGCAGCGCAGGTTCTGGCGCGAAGGCGAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-676)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	58.75	97.826	0.575
comA	Ralstonia pseudosolanacearum GMI1000	36.071	100	0.412