Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C3F42_RS07540 Genome accession   NZ_CP026386
Coordinates   1663135..1663770 (-) Length   211 a.a.
NCBI ID   WP_031315993.1    Uniprot ID   A0AAJ5SRG4
Organism   Pseudomonas sp. PONIH3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1658135..1668770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F42_RS07510 (C3F42_07510) murB 1659234..1660253 (-) 1020 WP_104444242.1 UDP-N-acetylmuramate dehydrogenase -
  C3F42_RS07515 (C3F42_07515) - 1660250..1660714 (-) 465 WP_038705674.1 low molecular weight protein-tyrosine-phosphatase -
  C3F42_RS07520 (C3F42_07520) kdsB 1660714..1661478 (-) 765 WP_104444243.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C3F42_RS07525 (C3F42_07525) - 1661475..1661660 (-) 186 WP_003247142.1 Trm112 family protein -
  C3F42_RS07530 (C3F42_07530) lpxK 1661694..1662704 (-) 1011 WP_038705672.1 tetraacyldisaccharide 4'-kinase -
  C3F42_RS07535 (C3F42_07535) - 1662704..1663138 (-) 435 WP_023632003.1 biopolymer transporter ExbD -
  C3F42_RS07540 (C3F42_07540) exbB 1663135..1663770 (-) 636 WP_031315993.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C3F42_RS07545 (C3F42_07545) comA 1663894..1666104 (-) 2211 WP_104444244.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C3F42_RS07550 (C3F42_07550) - 1666249..1666896 (+) 648 WP_158659543.1 DUF2062 domain-containing protein -
  C3F42_RS07555 (C3F42_07555) - 1666780..1667559 (-) 780 WP_023631459.1 ABC transporter permease -
  C3F42_RS07560 (C3F42_07560) - 1667556..1668488 (-) 933 WP_104444245.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22829.14 Da        Isoelectric Point: 7.3616

>NTDB_id=269043 C3F42_RS07540 WP_031315993.1 1663135..1663770(-) (exbB) [Pseudomonas sp. PONIH3]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYIGTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=269043 C3F42_RS07540 WP_031315993.1 1663135..1663770(-) (exbB) [Pseudomonas sp. PONIH3]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGTTGCCATGGCGATCGTCGT
CGAGCGTCTATGGACCTTGCGCGCCAGCCGTGTCAGCCCACCGCACTTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCAGCCTCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CGGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTACTGGCCGGCGGTATTTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment