Detailed information NTG0026865

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SHEWANA3_RS02215
• Genome accession: NC_008577
• Coordinates: 474440..475366 (-)
• Length: 308 a.a.
• NCBI ID: WP_041412917.1
• Uniprot ID: -
• Organism: Shewanella sp. ANA-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 469440..480366

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SHEWANA3_RS02185 (Shewana3_0411)	-	470567..471493 (+)	927	WP_011715626.1	exopolyphosphatase	-
SHEWANA3_RS02190 (Shewana3_0412)	-	471568..472104 (-)	537	WP_011715627.1	thioredoxin family protein	-
SHEWANA3_RS02195 (Shewana3_0413)	mutT	472252..472650 (-)	399	WP_011715628.1	8-oxo-dGTP diphosphatase MutT	-
SHEWANA3_RS02200 (Shewana3_0414)	yacG	472685..472894 (-)	210	WP_011621218.1	DNA gyrase inhibitor YacG	-
SHEWANA3_RS02205 (Shewana3_0415)	zapD	473002..473736 (-)	735	WP_011715629.1	cell division protein ZapD	-
SHEWANA3_RS02210 (Shewana3_0416)	coaE	473729..474346 (-)	618	WP_011715630.1	dephospho-CoA kinase	-
SHEWANA3_RS02215 (Shewana3_0417)	pilD	474440..475366 (-)	927	WP_041412917.1	A24 family peptidase	Machinery gene
SHEWANA3_RS02220 (Shewana3_0418)	pilC	475431..476702 (-)	1272	WP_011715632.1	type II secretion system F family protein	Machinery gene
SHEWANA3_RS02225 (Shewana3_0419)	pilB	476825..478534 (-)	1710	WP_011715633.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SHEWANA3_RS23550	-	479352..480278 (+)	927	WP_166485342.1	O-antigen ligase family protein	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34322.74 Da
• Isoelectric Point: 7.0173

>NTDB_id=26865 SHEWANA3_RS02215 WP_041412917.1 474440..475366(-) (pilD) [Shewanella sp. ANA-3]
MTDFISLLSHSLAQSPWLFITLSFVFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHADVVEQIGIEKLNKPIDTY
PEKYNLVVPGSACPKCKTAIKPWHNLPIVGWLMLRGKCAACNTAISSRYPIIELVTGLLVATLAWHFGPSWQFVFAAVLT
FVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTTPTDAVIGAAAGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGALVGITLIVLKRNQLANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=26865 SHEWANA3_RS02215 WP_041412917.1 474440..475366(-) (pilD) [Shewanella sp. ANA-3]
ATGACTGACTTTATTTCTCTTTTAAGCCACTCTCTAGCTCAGAGTCCTTGGCTGTTTATTACGTTAAGTTTTGTGTTTGC
CGCCACTATTGGCAGCTTTTTAAATGTCGTCATTCACCGCTTTCCGGTGATGATGAAGCGCGAGTGGCAACAGGAGTGCA
ATCAATATCTACAGGAATATCATGCAGATGTAGTAGAGCAGATTGGTATCGAAAAGCTCAACAAGCCGATAGATACTTAC
CCTGAAAAATACAATCTCGTGGTGCCAGGTTCCGCCTGTCCTAAATGTAAGACCGCAATCAAACCTTGGCATAATTTGCC
GATTGTGGGCTGGTTAATGCTCAGGGGAAAATGCGCCGCCTGCAATACAGCAATCTCCTCTCGCTATCCGATTATTGAGT
TAGTAACAGGATTACTCGTTGCAACGCTCGCTTGGCATTTTGGTCCTAGCTGGCAATTTGTGTTTGCTGCGGTATTAACC
TTTGTATTGATTGCATTAACGGGTATCGATCTGGATGAGATGCTGCTTCCCGACCAGATGACCCTTCCACTCCTATGGCT
AGGATTACTCATTAACCTCAACCATACCTTTACTACTCCAACCGATGCCGTTATAGGTGCTGCAGCGGGCTATTTGAGTC
TCTGGTCAGTATTTTGGCTGTTTAAGTTGCTCACAGGTAAAGAAGGCATGGGTTATGGCGACTTTAAACTGCTCGCCGTA
TTTGGTGCATGGCTAGGTTGGCAAATGCTCCCCCTAGTCATTTTACTATCCTCTTTAGTTGGTGCCCTTGTCGGCATCAC
GCTCATCGTACTCAAACGTAATCAGCTAGCCAATCCAATCCCCTTTGGGCCCTATATTGCCGCTGCAGGTTGGATAGCCC
TGATATGGGGACAACCTATAGTCGATTGGTATCTAAGTACGCTATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (158-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.864	95.779	0.497
pilD	Acinetobacter nosocomialis M2	48.693	99.351	0.484
pilD	Acinetobacter baumannii D1279779	48.366	99.351	0.481
pilD	Vibrio campbellii strain DS40M4	50.34	95.455	0.481
pilD	Neisseria gonorrhoeae MS11	46.392	94.481	0.438