Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MMC1_RS18840 Genome accession   NC_008576
Coordinates   4602858..4603400 (+) Length   180 a.a.
NCBI ID   WP_011715203.1    Uniprot ID   -
Organism   Magnetococcus marinus MC-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4597858..4608400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMC1_RS18820 (Mmc1_3661) dprA 4599062..4600147 (-) 1086 WP_160162739.1 DNA-processing protein DprA -
  MMC1_RS18825 (Mmc1_3662) plsY 4600165..4600776 (-) 612 WP_011715200.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  MMC1_RS18830 (Mmc1_3663) - 4600915..4601652 (-) 738 WP_011715201.1 class I SAM-dependent methyltransferase -
  MMC1_RS18835 (Mmc1_3664) dctP 4601691..4602725 (-) 1035 WP_011715202.1 TRAP transporter substrate-binding protein DctP -
  MMC1_RS18840 (Mmc1_3665) ssb 4602858..4603400 (+) 543 WP_011715203.1 single-stranded DNA-binding protein Machinery gene
  MMC1_RS18845 (Mmc1_3666) - 4603530..4604411 (-) 882 WP_011715204.1 hypothetical protein -
  MMC1_RS18850 (Mmc1_3667) - 4604431..4605648 (-) 1218 WP_011715205.1 NAD(P)/FAD-dependent oxidoreductase -
  MMC1_RS18855 (Mmc1_3668) rsmB 4605863..4607221 (-) 1359 WP_011715206.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  MMC1_RS18860 (Mmc1_3669) yihA 4607587..4608243 (-) 657 WP_011715207.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18946.77 Da        Isoelectric Point: 4.7051

>NTDB_id=26863 MMC1_RS18840 WP_011715203.1 4602858..4603400(+) (ssb) [Magnetococcus marinus MC-1]
MAFSLNKVQLIGNLGADPEVRYTQAGKAMANLNIATSESWNDQQGQRQERTEWHRVVIFGKAAEIAQQYMRKGSKVYIEG
QLQTRKWQDQSGQDRYTTEVVISGFNGQMIILDRPSGGGFGGGGAPAGGFGGGAPNAGFAGGPPQGSPAPSGAANQGSGT
FSSPADTFNEGPDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=26863 MMC1_RS18840 WP_011715203.1 4602858..4603400(+) (ssb) [Magnetococcus marinus MC-1]
ATGGCCTTTTCCCTTAATAAAGTACAACTGATTGGCAATCTGGGTGCAGACCCAGAGGTGCGCTATACCCAGGCGGGTAA
GGCGATGGCCAATTTAAACATTGCCACCAGTGAATCATGGAACGATCAACAGGGCCAGCGCCAAGAGCGTACCGAATGGC
ACCGGGTTGTGATCTTTGGCAAAGCCGCAGAGATCGCCCAGCAATATATGCGTAAAGGCAGCAAGGTCTATATCGAAGGG
CAGCTGCAAACCCGCAAATGGCAGGATCAGAGCGGTCAAGATCGCTACACCACCGAAGTGGTGATCAGCGGCTTTAATGG
GCAGATGATTATCTTAGACCGGCCCAGCGGCGGCGGCTTTGGTGGCGGCGGGGCCCCAGCCGGAGGTTTTGGCGGTGGTG
CGCCCAACGCGGGTTTTGCTGGCGGCCCCCCCCAGGGTAGTCCTGCCCCGAGCGGTGCTGCCAACCAAGGCAGCGGCACC
TTCTCATCCCCGGCGGATACCTTTAATGAAGGCCCCGACTTTGATGATGATATCCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.742

98.889

0.561
  ssb Glaesserella parasuis strain SC1401

49.741

100

0.533
  ssb Neisseria meningitidis MC58

42.308

100

0.428
  ssb Neisseria gonorrhoeae MS11

41.436

100

0.417

Multiple sequence alignment