Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2R16_RS22040 Genome accession   NZ_CP026347
Coordinates   4274119..4274655 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 7A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4269119..4279655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2R16_RS22020 aphA 4269408..4270121 (+) 714 WP_001226928.1 acid phosphatase AphA -
  C2R16_RS22025 yjbQ 4270232..4270648 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C2R16_RS22030 yjbR 4270652..4271008 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C2R16_RS22035 uvrA 4271043..4273865 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  C2R16_RS22040 ssb 4274119..4274655 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C2R16_RS22045 yjcB 4274754..4275035 (-) 282 WP_001295689.1 YjcB family protein -
  C2R16_RS22055 pdeC 4275465..4277051 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  C2R16_RS22060 soxS 4277054..4277377 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C2R16_RS22065 soxR 4277463..4277927 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=268486 C2R16_RS22040 WP_000168305.1 4274119..4274655(+) (ssb) [Escherichia coli strain 7A]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=268486 C2R16_RS22040 WP_000168305.1 4274119..4274655(+) (ssb) [Escherichia coli strain 7A]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment