Detailed information NTG0026834

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AHA_RS19560
• Genome accession: NC_008570
• Coordinates: 4301472..4302344 (+)
• Length: 290 a.a.
• NCBI ID: WP_011707571.1
• Uniprot ID: A0KPV9
• Organism: Aeromonas hydrophila subsp. hydrophila ATCC 7966
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4296472..4307344

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AHA_RS19540 (AHA_3867)	nadC	4296721..4297578 (+)	858	WP_011707567.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AHA_RS19545 (AHA_3868)	tapA	4297901..4298383 (+)	483	WP_011707568.1	type IVa pilus major pilin TapA	-
AHA_RS19550 (AHA_3869)	pilB	4298377..4300092 (+)	1716	WP_011707569.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
AHA_RS19555 (AHA_3870)	pilC	4300208..4301449 (+)	1242	WP_011707570.1	type II secretion system F family protein	Machinery gene
AHA_RS19560 (AHA_3871)	pilD	4301472..4302344 (+)	873	WP_011707571.1	A24 family peptidase	Machinery gene
AHA_RS19565 (AHA_3872)	coaE	4302364..4302978 (+)	615	WP_011707572.1	dephospho-CoA kinase	-
AHA_RS19570 (AHA_3873)	zapD	4303016..4303738 (+)	723	WP_024945431.1	cell division protein ZapD	-
AHA_RS19575 (AHA_3874)	yacG	4303748..4303942 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
AHA_RS19580 (AHA_3875)	mutT	4304003..4304416 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
AHA_RS19585 (AHA_3876)	-	4304425..4305609 (-)	1185	WP_011707575.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32509.91 Da
• Isoelectric Point: 6.7410

>NTDB_id=26834 AHA_RS19560 WP_011707571.1 4301472..4302344(+) (pilD) [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETLPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISVRYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFIPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=26834 AHA_RS19560 WP_011707571.1 4301472..4302344(+) (pilD) [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCTCGGCTATTTCA
ATCCGGAAACACTGCCGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGACGCTGCCGTGAATGCCAGGCCCCTATCTC
GGTCCGTTATCCTCTGGTGGAATTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCGACATTTGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTGACCCTGCCACTGTTGTGGGGCGGCCTGCTGTTCAACCTGGCAGGGGGATTTATACCGCTGGCCGATGCGGTGATCGG
CGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGCTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

3D structure

• AlphaFold DB: A0KPV9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.49	98.621	0.597
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459