Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A5904_RS06115 | Genome accession | NZ_CP026328 |
| Coordinates | 1266463..1266969 (-) | Length | 168 a.a. |
| NCBI ID | WP_064306486.1 | Uniprot ID | - |
| Organism | Acidithiobacillus caldus strain MTH-04 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1267450..1309730 | 1266463..1266969 | flank | 481 |
Gene organization within MGE regions
Location: 1266463..1309730
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5904_RS06115 (A5904_05525) | ssb | 1266463..1266969 (-) | 507 | WP_064306486.1 | single-stranded DNA-binding protein | Machinery gene |
| A5904_RS06120 (A5904_05520) | - | 1267015..1267359 (-) | 345 | WP_014002672.1 | TraR/DksA C4-type zinc finger protein | - |
| A5904_RS06125 (A5904_05515) | - | 1267582..1268394 (-) | 813 | WP_233444868.1 | metallophosphoesterase | - |
| A5904_RS06130 (A5904_05510) | - | 1268351..1269292 (-) | 942 | WP_014002670.1 | phospholipase D-like domain-containing protein | - |
| A5904_RS06135 (A5904_15870) | - | 1270506..1271720 (+) | 1215 | WP_012387019.1 | ISL3-like element ISAtc1 family transposase | - |
| A5904_RS06140 (A5904_05495) | - | 1271967..1272146 (-) | 180 | WP_041636158.1 | hypothetical protein | - |
| A5904_RS06145 (A5904_05490) | - | 1272599..1275757 (-) | 3159 | WP_041636155.1 | type I restriction endonuclease subunit R | - |
| A5904_RS06150 (A5904_05485) | - | 1275754..1276206 (-) | 453 | WP_014002666.1 | hypothetical protein | - |
| A5904_RS06155 (A5904_05480) | - | 1276203..1276898 (-) | 696 | WP_325063382.1 | type II toxin-antitoxin system MqsA family antitoxin | - |
| A5904_RS06165 (A5904_05470) | - | 1277275..1277538 (-) | 264 | WP_014002663.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| A5904_RS06175 (A5904_05460) | istB | 1277833..1278618 (-) | 786 | WP_014002165.1 | IS21-like element helper ATPase IstB | - |
| A5904_RS06180 (A5904_05455) | istA | 1278627..1280150 (-) | 1524 | WP_014002164.1 | IS21 family transposase | - |
| A5904_RS06185 (A5904_05370) | - | 1280645..1281859 (-) | 1215 | WP_012387019.1 | ISL3-like element ISAtc1 family transposase | - |
| A5904_RS06190 (A5904_15875) | - | 1281926..1282303 (+) | 378 | Protein_1215 | transposase | - |
| A5904_RS06195 (A5904_04695) | - | 1282292..1283485 (-) | 1194 | WP_103415009.1 | type IV secretion system DNA-binding domain-containing protein | - |
| A5904_RS06200 (A5904_04700) | - | 1283500..1283823 (-) | 324 | WP_014002574.1 | hypothetical protein | - |
| A5904_RS06205 (A5904_04705) | - | 1283890..1284492 (-) | 603 | WP_103415010.1 | hypothetical protein | - |
| A5904_RS06210 (A5904_15880) | - | 1284546..1285760 (-) | 1215 | WP_012387019.1 | ISL3-like element ISAtc1 family transposase | - |
| A5904_RS06215 (A5904_15885) | - | 1285853..1287067 (-) | 1215 | WP_012387019.1 | ISL3-like element ISAtc1 family transposase | - |
| A5904_RS06220 (A5904_15890) | - | 1287218..1288435 (+) | 1218 | WP_014002536.1 | ISL3-like element ISAtc2 family transposase | - |
| A5904_RS06225 (A5904_04755) | - | 1289190..1289915 (+) | 726 | WP_064306523.1 | hypothetical protein | - |
| A5904_RS06230 (A5904_04760) | - | 1289917..1290579 (+) | 663 | WP_064306524.1 | hypothetical protein | - |
| A5904_RS06235 (A5904_04765) | - | 1291039..1291596 (+) | 558 | WP_081254376.1 | GNAT family N-acetyltransferase | - |
| A5904_RS06240 (A5904_04770) | - | 1291698..1295210 (-) | 3513 | WP_064306457.1 | toprim domain-containing protein | - |
| A5904_RS06245 (A5904_04775) | - | 1295207..1296118 (-) | 912 | WP_014002578.1 | hypothetical protein | - |
| A5904_RS06250 (A5904_15895) | - | 1296115..1296618 (-) | 504 | WP_148262191.1 | hypothetical protein | - |
| A5904_RS06255 (A5904_04780) | - | 1297154..1298941 (+) | 1788 | WP_014002579.1 | site-specific integrase | - |
| A5904_RS06260 (A5904_04785) | - | 1300215..1301000 (+) | 786 | WP_014002580.1 | hypothetical protein | - |
| A5904_RS06265 (A5904_04790) | - | 1301393..1302448 (+) | 1056 | WP_014002136.1 | IS5 family transposase | - |
| A5904_RS06270 (A5904_04795) | - | 1302575..1303525 (+) | 951 | WP_411675443.1 | LysR family transcriptional regulator | - |
| A5904_RS06275 (A5904_04800) | - | 1303681..1305375 (+) | 1695 | WP_041636067.1 | proton-conducting transporter membrane subunit | - |
| A5904_RS06280 (A5904_04805) | - | 1305372..1307777 (+) | 2406 | WP_041636069.1 | YbcC family protein | - |
| A5904_RS06285 (A5904_04810) | - | 1307846..1308910 (+) | 1065 | WP_226047594.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18643.79 Da Isoelectric Point: 9.2040
>NTDB_id=268250 A5904_RS06115 WP_064306486.1 1266463..1266969(-) (ssb) [Acidithiobacillus caldus strain MTH-04]
MSGVNKVILLGYLGADPEMRYMPDGTAVANLSIATSESYKDKEGNRQERTEWHRVSLYRRQAEVAGEYLKKGSMAYVEGR
LRTRKWTDKEGQERYTTEIVGDRLQLIGGRRDGDGQESVNGGSKNGRPASKGSGGGANMDVPPDDFDDEIPFAIAADIAR
RGLRRVRF
MSGVNKVILLGYLGADPEMRYMPDGTAVANLSIATSESYKDKEGNRQERTEWHRVSLYRRQAEVAGEYLKKGSMAYVEGR
LRTRKWTDKEGQERYTTEIVGDRLQLIGGRRDGDGQESVNGGSKNGRPASKGSGGGANMDVPPDDFDDEIPFAIAADIAR
RGLRRVRF
Nucleotide
Download Length: 507 bp
>NTDB_id=268250 A5904_RS06115 WP_064306486.1 1266463..1266969(-) (ssb) [Acidithiobacillus caldus strain MTH-04]
ATGAGTGGTGTGAACAAGGTGATTTTGTTGGGGTACCTGGGCGCTGACCCGGAAATGCGGTACATGCCCGATGGTACGGC
AGTGGCCAATCTTTCCATTGCCACATCGGAGTCCTACAAGGACAAGGAGGGGAATCGGCAGGAGCGCACGGAATGGCATC
GTGTATCTCTGTACCGTCGTCAGGCTGAGGTTGCCGGAGAGTATCTCAAGAAGGGCAGCATGGCCTACGTCGAGGGCCGT
CTCCGTACCCGGAAATGGACCGACAAAGAGGGCCAGGAGCGCTATACTACCGAGATTGTCGGCGATCGTTTGCAGTTGAT
AGGCGGACGCCGGGATGGTGATGGTCAGGAATCTGTGAACGGCGGTTCCAAGAATGGCCGTCCGGCTTCCAAGGGCTCTG
GTGGTGGTGCCAACATGGATGTACCGCCGGACGATTTTGACGACGAAATTCCGTTCGCGATCGCTGCGGATATCGCGCGT
CGAGGATTGCGGCGGGTTCGGTTCTGA
ATGAGTGGTGTGAACAAGGTGATTTTGTTGGGGTACCTGGGCGCTGACCCGGAAATGCGGTACATGCCCGATGGTACGGC
AGTGGCCAATCTTTCCATTGCCACATCGGAGTCCTACAAGGACAAGGAGGGGAATCGGCAGGAGCGCACGGAATGGCATC
GTGTATCTCTGTACCGTCGTCAGGCTGAGGTTGCCGGAGAGTATCTCAAGAAGGGCAGCATGGCCTACGTCGAGGGCCGT
CTCCGTACCCGGAAATGGACCGACAAAGAGGGCCAGGAGCGCTATACTACCGAGATTGTCGGCGATCGTTTGCAGTTGAT
AGGCGGACGCCGGGATGGTGATGGTCAGGAATCTGTGAACGGCGGTTCCAAGAATGGCCGTCCGGCTTCCAAGGGCTCTG
GTGGTGGTGCCAACATGGATGTACCGCCGGACGATTTTGACGACGAAATTCCGTTCGCGATCGCTGCGGATATCGCGCGT
CGAGGATTGCGGCGGGTTCGGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
48.889 |
100 |
0.524 |
| ssb | Vibrio cholerae strain A1552 |
48.864 |
100 |
0.512 |
| ssb | Neisseria meningitidis MC58 |
42.442 |
100 |
0.435 |
| ssb | Neisseria gonorrhoeae MS11 |
41.86 |
100 |
0.429 |