Detailed information NTG0267921

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: C2U47_RS12285
• Genome accession: NZ_CP026226
• Coordinates: 2614457..2615026 (-)
• Length: 189 a.a.
• NCBI ID: WP_010674212.1
• Uniprot ID: A0A081LN46
• Organism: Aeromonas sp. ASNIH7
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2602068..2615026	2614457..2615026	within	0

Gene organization within MGE regions

Location: 2602068..2615026

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2U47_RS12230 (C2U47_12230)	tetR	2602068..2602703 (-)	636	WP_017780888.1	tetracycline resistance transcriptional repressor TetR	-
C2U47_RS12235 (C2U47_12235)	-	2602784..2603710 (+)	927	Protein_2354	TCR/Tet family MFS transporter	-
C2U47_RS12240 (C2U47_12240)	-	2603817..2604848 (+)	1032	WP_001809438.1	IS630-like element ISAhy2 family transposase	-
C2U47_RS12245 (C2U47_12245)	-	2604868..2605161 (+)	294	Protein_2356	tetracycline resistance MFS efflux pump	-
C2U47_RS12250 (C2U47_12250)	-	2605249..2605917 (-)	669	WP_017780890.1	hypothetical protein	-
C2U47_RS23305	-	2606076..2606237 (-)	162	Protein_2358	IS5/IS1182 family transposase	-
C2U47_RS12255 (C2U47_12255)	-	2606455..2608617 (-)	2163	WP_025202554.1	AAA family ATPase	-
C2U47_RS12260 (C2U47_12260)	-	2608614..2609051 (-)	438	WP_025202555.1	VPA1267 family protein	-
C2U47_RS12265 (C2U47_12265)	-	2609051..2609530 (-)	480	WP_049866848.1	hypothetical protein	-
C2U47_RS12270 (C2U47_12270)	-	2609518..2611395 (-)	1878	WP_041207315.1	integrase	-
C2U47_RS12275 (C2U47_12275)	-	2611405..2612973 (-)	1569	WP_171269322.1	site-specific integrase	-
C2U47_RS12280 (C2U47_12280)	-	2612970..2614292 (-)	1323	WP_041207317.1	site-specific integrase	-
C2U47_RS12285 (C2U47_12285)	ssb	2614457..2615026 (-)	570	WP_010674212.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 189 a.a.
• Molecular weight: 20813.18 Da
• Isoelectric Point: 5.9247

>NTDB_id=267921 C2U47_RS12285 WP_010674212.1 2614457..2615026(-) (ssb) [Aeromonas sp. ASNIH7]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGGQGMGGQSSQGNWGQPQQAAPQQNMQRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide

• Length: 570 bp

>NTDB_id=267921 C2U47_RS12285 WP_010674212.1 2614457..2615026(-) (ssb) [Aeromonas sp. ASNIH7]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGATACTTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTCCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTGGTCGACAGCTT
CACCGGTGTGATGCAGATGCTGGGTGGCCGTCCGCAGGGCGGTGGCCAGGGCATGGGCGGCCAGTCATCCCAGGGCAACT
GGGGCCAGCCGCAACAGGCTGCACCGCAACAGAACATGCAACGTCCTGCTGCCCCGCAGCAGAACATGCAACCGCAAGGC
GGTTACGGCCGTCCGGCCCAGCAGCCGCAATCCGCCCCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGATAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-107)

3D structure

• AlphaFold DB: A0A081LN46

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	68.912	100	0.704
ssb	Glaesserella parasuis strain SC1401	54.011	98.942	0.534
ssb	Neisseria meningitidis MC58	47.34	99.471	0.471
ssb	Neisseria gonorrhoeae MS11	46.774	98.413	0.46