Detailed information NTG0267915

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C2U47_RS07400
• Genome accession: NZ_CP026226
• Coordinates: 1583305..1584180 (+)
• Length: 291 a.a.
• NCBI ID: WP_103261555.1
• Uniprot ID: -
• Organism: Aeromonas sp. ASNIH7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1578305..1589180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2U47_RS07380 (C2U47_07380)	nadC	1578596..1579459 (+)	864	WP_103261552.1	carboxylating nicotinate-nucleotide diphosphorylase	-
C2U47_RS23620 (C2U47_07385)	-	1579770..1580144 (+)	375	WP_103261553.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
C2U47_RS07390 (C2U47_07390)	pilB	1580152..1581858 (+)	1707	WP_103261554.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
C2U47_RS07395 (C2U47_07395)	pilC	1581986..1583227 (+)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
C2U47_RS07400 (C2U47_07400)	pilD	1583305..1584180 (+)	876	WP_103261555.1	A24 family peptidase	Machinery gene
C2U47_RS07405 (C2U47_07405)	coaE	1584199..1584813 (+)	615	WP_043154105.1	dephospho-CoA kinase	-
C2U47_RS07410 (C2U47_07410)	zapD	1584851..1585573 (+)	723	WP_010675825.1	cell division protein ZapD	-
C2U47_RS07415 (C2U47_07415)	yacG	1585584..1585778 (+)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
C2U47_RS07420 (C2U47_07420)	mutT	1585836..1586240 (-)	405	WP_174218568.1	8-oxo-dGTP diphosphatase MutT	-
C2U47_RS07425 (C2U47_07425)	-	1586249..1587433 (-)	1185	WP_103261557.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31979.12 Da
• Isoelectric Point: 7.0913

>NTDB_id=267915 C2U47_RS07400 WP_103261555.1 1583305..1584180(+) (pilD) [Aeromonas sp. ASNIH7]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEATPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=267915 C2U47_RS07400 WP_103261555.1 1583305..1584180(+) (pilD) [Aeromonas sp. ASNIH7]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGTCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGCGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCTTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCGGGTTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCTTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.417	98.969	0.598
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46