Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2U39_RS02035 Genome accession   NZ_CP026222
Coordinates   396419..396988 (-) Length   189 a.a.
NCBI ID   WP_010674212.1    Uniprot ID   A0A081LN46
Organism   Aeromonas sp. ASNIH3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 391419..401988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U39_RS02005 (C2U39_02005) - 391843..392565 (+) 723 WP_010675899.1 response regulator -
  C2U39_RS02010 (C2U39_02010) - 392573..393958 (+) 1386 WP_049636323.1 ATP-binding protein -
  C2U39_RS02015 (C2U39_02015) - 394135..394344 (-) 210 WP_010675897.1 cold-shock protein -
  C2U39_RS02020 (C2U39_02020) yjbD 394737..395021 (-) 285 WP_039040119.1 DUF3811 domain-containing protein -
  C2U39_RS24690 (C2U39_02025) - 395318..395440 (+) 123 WP_010675895.1 hypothetical protein -
  C2U39_RS02030 (C2U39_02030) - 395487..396257 (-) 771 WP_103259435.1 transporter substrate-binding domain-containing protein -
  C2U39_RS02035 (C2U39_02035) ssb 396419..396988 (-) 570 WP_010674212.1 single-stranded DNA-binding protein Machinery gene
  C2U39_RS02040 (C2U39_02040) - 397507..398145 (+) 639 WP_010674213.1 LuxR C-terminal-related transcriptional regulator -
  C2U39_RS02045 (C2U39_02045) uvrA 398239..401067 (+) 2829 WP_039040117.1 excinuclease ABC subunit UvrA -
  C2U39_RS24695 - 401184..401309 (-) 126 WP_010674215.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20813.18 Da        Isoelectric Point: 5.9247

>NTDB_id=267880 C2U39_RS02035 WP_010674212.1 396419..396988(-) (ssb) [Aeromonas sp. ASNIH3]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGGQGMGGQSSQGNWGQPQQAAPQQNMQRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=267880 C2U39_RS02035 WP_010674212.1 396419..396988(-) (ssb) [Aeromonas sp. ASNIH3]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGATACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACTG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAGCTCCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTGGTCGACAGCTT
CACCGGTGTGATGCAGATGCTGGGTGGCCGTCCGCAGGGCGGTGGCCAGGGCATGGGCGGCCAGTCATCCCAGGGCAACT
GGGGCCAGCCGCAACAGGCTGCACCGCAACAGAACATGCAACGTCCTGCTGCCCCGCAGCAGAACATGCAACCGCAAGGC
GGTTACGGCCGTCCGGCCCAGCAGCCGCAATCCGCCCCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGATAT
TCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081LN46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.912

100

0.704
  ssb Glaesserella parasuis strain SC1401

54.011

98.942

0.534
  ssb Neisseria meningitidis MC58

47.34

99.471

0.471
  ssb Neisseria gonorrhoeae MS11

46.774

98.413

0.46

Multiple sequence alignment