Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2U40_RS20500 Genome accession   NZ_CP026217
Coordinates   4377438..4378016 (+) Length   192 a.a.
NCBI ID   WP_011707639.1    Uniprot ID   A0AAX0XSG5
Organism   Aeromonas sp. ASNIH4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4372438..4383016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U40_RS20490 (C2U40_20495) uvrA 4373329..4376157 (-) 2829 WP_029302578.1 excinuclease ABC subunit UvrA -
  C2U40_RS20495 (C2U40_20500) - 4376253..4376912 (-) 660 WP_103828012.1 LuxR C-terminal-related transcriptional regulator -
  C2U40_RS20500 (C2U40_20505) ssb 4377438..4378016 (+) 579 WP_011707639.1 single-stranded DNA-binding protein Machinery gene
  C2U40_RS20505 (C2U40_20510) - 4378184..4378942 (+) 759 WP_103828011.1 transporter substrate-binding domain-containing protein -
  C2U40_RS26845 (C2U40_20515) - 4379023..4379148 (-) 126 WP_257721615.1 hypothetical protein -
  C2U40_RS20515 (C2U40_20520) - 4379599..4380477 (+) 879 WP_029305195.1 cation diffusion facilitator family transporter -
  C2U40_RS20520 (C2U40_20525) - 4380626..4380910 (+) 285 WP_024946369.1 DUF3811 domain-containing protein -
  C2U40_RS20525 (C2U40_20530) - 4381310..4381522 (+) 213 WP_011707644.1 cold-shock protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21161.56 Da        Isoelectric Point: 5.9247

>NTDB_id=267873 C2U40_RS20500 WP_011707639.1 4377438..4378016(+) (ssb) [Aeromonas sp. ASNIH4]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGGAGQGMGGQSQGNWGQQQGMQSQQPMNQARPAQAPQQNMQ
QQGGYARPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=267873 C2U40_RS20500 WP_011707639.1 4377438..4378016(+) (ssb) [Aeromonas sp. ASNIH4]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAATATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGCGTTGTCTTCATGGGCAAGCTGGCTGAAGTAGCTGGCGAGTACCTGAAGAAAGGCTCCCAAGTCTATGTT
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAAAGCGGCCAAGAGCGTTACACCACCGAAGTGCTGGTCGATGGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGCCCGCAAGGCGGTGCCGGCCAGGGCATGGGTGGCCAGTCTCAGGGCAACT
GGGGTCAGCAGCAGGGCATGCAGTCCCAGCAGCCGATGAACCAGGCGCGTCCTGCCCAGGCTCCGCAGCAGAACATGCAG
CAACAGGGCGGCTACGCTCGTCCGGCCCAGCAGCCGCAGTCTGCACCGCCGGTGTACAATGAGCCACCGATGGACTTCGA
CGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.497

100

0.682
  ssb Glaesserella parasuis strain SC1401

53.684

98.958

0.531
  ssb Neisseria meningitidis MC58

47.917

100

0.479
  ssb Neisseria gonorrhoeae MS11

47.895

98.958

0.474

Multiple sequence alignment