Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DZR09_RS09540 Genome accession   NZ_CP031631
Coordinates   1876965..1878071 (+) Length   368 a.a.
NCBI ID   WP_129821059.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain MGAS28191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1871965..1883071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZR09_RS09520 (DZR09_09515) hasA 1872642..1873902 (+) 1261 Protein_1783 hyaluronan synthase HasA -
  DZR09_RS09525 (DZR09_09520) hasB 1873938..1875146 (+) 1209 WP_011285337.1 UDP-glucose 6-dehydrogenase HasB -
  DZR09_RS09530 (DZR09_09530) hasC 1875328..1876242 (+) 915 WP_129796161.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  DZR09_RS09535 (DZR09_09535) yaaA 1876550..1876963 (+) 414 WP_002991446.1 S4 domain-containing protein YaaA -
  DZR09_RS09540 (DZR09_09540) recF 1876965..1878071 (+) 1107 WP_129821059.1 DNA replication/repair protein RecF Machinery gene
  DZR09_RS09545 (DZR09_09545) - 1878128..1878991 (-) 864 WP_002991450.1 GRP family sugar transporter -
  DZR09_RS09550 (DZR09_09550) guaB 1879194..1880675 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  DZR09_RS09555 (DZR09_09555) trpS 1880983..1882005 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41828.74 Da        Isoelectric Point: 8.4064

>NTDB_id=267872 DZR09_RS09540 WP_129821059.1 1876965..1878071(+) (recF) [Streptococcus pyogenes strain MGAS28191]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVFFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=267872 DZR09_RS09540 WP_129821059.1 1876965..1878071(+) (recF) [Streptococcus pyogenes strain MGAS28191]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTTTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAACCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

44.744

100

0.451

Multiple sequence alignment