Detailed information NTG0267872

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C2U40_RS19845
• Genome accession: NZ_CP026217
• Coordinates: 4249976..4250848 (+)
• Length: 290 a.a.
• NCBI ID: WP_103827110.1
• Uniprot ID: -
• Organism: Aeromonas sp. ASNIH4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4244976..4255848

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2U40_RS19820 (C2U40_19825)	nadC	4245272..4246129 (+)	858	WP_103827108.1	carboxylating nicotinate-nucleotide diphosphorylase	-
C2U40_RS19830 (C2U40_19835)	-	4246452..4246883 (+)	432	WP_041216993.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
C2U40_RS19835 (C2U40_19840)	pilB	4246890..4248596 (+)	1707	WP_103827109.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
C2U40_RS19840 (C2U40_19845)	pilC	4248712..4249953 (+)	1242	WP_017409439.1	type II secretion system F family protein	Machinery gene
C2U40_RS19845 (C2U40_19850)	pilD	4249976..4250848 (+)	873	WP_103827110.1	A24 family peptidase	Machinery gene
C2U40_RS19850 (C2U40_19855)	coaE	4250867..4251481 (+)	615	WP_103827111.1	dephospho-CoA kinase	-
C2U40_RS19855 (C2U40_19860)	zapD	4251519..4252241 (+)	723	WP_024945431.1	cell division protein ZapD	-
C2U40_RS19860 (C2U40_19865)	yacG	4252251..4252445 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
C2U40_RS19865 (C2U40_19870)	mutT	4252506..4252919 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
C2U40_RS19870 (C2U40_19875)	-	4252928..4254112 (-)	1185	WP_103827112.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32476.79 Da
• Isoelectric Point: 6.7410

>NTDB_id=267872 C2U40_RS19845 WP_103827110.1 4249976..4250848(+) (pilD) [Aeromonas sp. ASNIH4]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAIENIPLLSWLWLKGRCRECQAPISARYPLVELLTSLLSLIVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGALMGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=267872 C2U40_RS19845 WP_103827110.1 4249976..4250848(+) (pilD) [Aeromonas sp. ASNIH4]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGAGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATAGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAACTGCTGACATCCCTGCTCTCGCTGATCGTCGCCGCAACATTCCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCAGACCAG
CTTACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAATTTGGCTGGGGGATTTGCACCGCTGGCCGATGCGGTGATCGG
CGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCGCTGCCCATCGTGCTGCTGCTCTCCTCCCTA
GTTGGCGCCCTCATGGGCATAGGCCTGATCCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	53.521	97.931	0.524
pilD	Acinetobacter nosocomialis M2	53.521	97.931	0.524
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459