Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C0971_RS17960 Genome accession   NZ_CP026143
Coordinates   3523183..3523677 (-) Length   164 a.a.
NCBI ID   WP_003347054.1    Uniprot ID   I3EBY4
Organism   Bacillus methanolicus strain DFS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3518183..3528677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS17935 (C0971_17960) rplI 3518845..3519294 (-) 450 WP_003347046.1 50S ribosomal protein L9 -
  C0971_RS17940 (C0971_17965) - 3519291..3521264 (-) 1974 WP_248892572.1 DHH family phosphoesterase -
  C0971_RS17945 (C0971_17970) - 3521296..3522240 (-) 945 WP_248892573.1 YybS family protein -
  C0971_RS17950 (C0971_17975) - 3522514..3522810 (-) 297 WP_248892574.1 hypothetical protein -
  C0971_RS17955 (C0971_17980) rpsR 3522895..3523134 (-) 240 WP_003347052.1 30S ribosomal protein S18 -
  C0971_RS17960 (C0971_17985) ssbA 3523183..3523677 (-) 495 WP_003347054.1 single-stranded DNA-binding protein Machinery gene
  C0971_RS17965 (C0971_17990) rpsF 3523754..3524041 (-) 288 WP_003347055.1 30S ribosomal protein S6 -
  C0971_RS17970 (C0971_17995) - 3524208..3525362 (-) 1155 WP_248892575.1 glycosyltransferase family 1 protein -
  C0971_RS17975 (C0971_18000) - 3525379..3525897 (-) 519 WP_003347059.1 phosphatase PAP2 family protein -
  C0971_RS17980 (C0971_18005) ychF 3526125..3527225 (-) 1101 WP_248892576.1 redox-regulated ATPase YchF -
  C0971_RS17985 (C0971_18010) - 3527366..3527563 (-) 198 WP_003347063.1 DUF951 domain-containing protein -
  C0971_RS17990 (C0971_18015) - 3527572..3528474 (-) 903 WP_003347065.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18428.15 Da        Isoelectric Point: 4.5716

>NTDB_id=267545 C0971_RS17960 WP_003347054.1 3523183..3523677(-) (ssbA) [Bacillus methanolicus strain DFS2]
MMNRVVLVGRLTRDPELRYTPNGVPVTTFTLAVNRTFTNQQGEREADFINCVVWRRAAENVANYLKKGSLAGVDGRLQTR
SYEGQDGRRVYVTEVLAESVQFLEPRSASSDRGDSGFYGGPRDQDNPFGNQNQRQNNNQGYTRIDEDPFAGDGQIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=267545 C0971_RS17960 WP_003347054.1 3523183..3523677(-) (ssbA) [Bacillus methanolicus strain DFS2]
ATGATGAATCGTGTCGTTCTTGTTGGACGGTTGACAAGAGATCCCGAGTTGCGCTACACACCAAATGGAGTTCCGGTTAC
AACTTTTACTCTTGCTGTAAATCGTACGTTTACGAACCAGCAAGGTGAACGGGAAGCAGACTTTATTAACTGTGTTGTTT
GGAGGCGTGCAGCGGAAAATGTCGCAAACTATTTGAAAAAAGGTAGTCTTGCTGGCGTAGATGGACGCTTGCAAACGCGC
AGCTATGAGGGCCAAGACGGAAGACGTGTTTATGTAACAGAAGTCTTAGCAGAAAGTGTTCAATTTCTTGAGCCGAGAAG
TGCTTCAAGTGACAGAGGCGACAGTGGTTTTTATGGTGGTCCAAGGGATCAAGACAATCCATTTGGAAATCAGAATCAAC
GCCAAAACAACAATCAAGGCTATACACGTATAGATGAAGATCCATTTGCCGGTGATGGGCAAATTGACATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3EBY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.364

100

0.732
  ssb Latilactobacillus sakei subsp. sakei 23K

56.977

100

0.598
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

64.634

0.396
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.378

Multiple sequence alignment