Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2U30_RS19210 Genome accession   NZ_CP026122
Coordinates   4074945..4075418 (-) Length   157 a.a.
NCBI ID   WP_103244313.1    Uniprot ID   -
Organism   Aeromonas sp. ASNIH5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4069945..4080418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U30_RS19190 (C2U30_19195) - 4071249..4071578 (-) 330 WP_103244311.1 hypothetical protein -
  C2U30_RS19195 (C2U30_19200) ettA 4071690..4073357 (-) 1668 WP_010673216.1 energy-dependent translational throttle protein EttA -
  C2U30_RS19200 (C2U30_19205) - 4073386..4074693 (-) 1308 WP_103244312.1 site-specific integrase -
  C2U30_RS19205 (C2U30_19210) xisR 4074669..4074884 (-) 216 WP_307773191.1 excisionase family protein -
  C2U30_RS19210 (C2U30_19215) ssb 4074945..4075418 (-) 474 WP_103244313.1 single-stranded DNA-binding protein Machinery gene
  C2U30_RS19215 (C2U30_19220) - 4075418..4075675 (-) 258 WP_103244314.1 hypothetical protein -
  C2U30_RS19220 (C2U30_19225) - 4075731..4075925 (-) 195 WP_102948876.1 hypothetical protein -
  C2U30_RS19225 (C2U30_19230) - 4075901..4076338 (-) 438 WP_103244315.1 hypothetical protein -
  C2U30_RS19230 (C2U30_19235) - 4076335..4076529 (-) 195 WP_102948874.1 hypothetical protein -
  C2U30_RS19235 (C2U30_19240) - 4076620..4078431 (-) 1812 WP_103244316.1 DNA cytosine methyltransferase -
  C2U30_RS19240 (C2U30_19245) - 4078428..4080173 (-) 1746 WP_103244317.1 phage N-6-adenine-methyltransferase -
  C2U30_RS19245 (C2U30_19250) - 4080211..4080414 (-) 204 WP_042016732.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17171.25 Da        Isoelectric Point: 8.4053

>NTDB_id=267338 C2U30_RS19210 WP_103244313.1 4074945..4075418(-) (ssb) [Aeromonas sp. ASNIH5]
MASRGINKAILIGNLGQDPEVRYMPGGNAVTSITLATSDTWRDKQTGEAKERTEWHRVVFMGMLAEVAGKHLKKGSQVYV
EGKLRTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGSGQNGGGKQQAAGSQQRPTPQPAQSPAYTEPPIAYDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=267338 C2U30_RS19210 WP_103244313.1 4074945..4075418(-) (ssb) [Aeromonas sp. ASNIH5]
ATGGCCAGCCGCGGTATCAACAAGGCCATCCTGATCGGCAACCTCGGCCAGGATCCGGAAGTGCGCTACATGCCCGGCGG
GAACGCTGTCACCAGCATCACCTTGGCGACCTCCGACACCTGGCGCGATAAGCAGACCGGCGAGGCCAAGGAGCGCACCG
AGTGGCATCGTGTCGTCTTCATGGGAATGTTGGCTGAGGTGGCAGGGAAGCACCTGAAGAAGGGCTCTCAGGTCTATGTG
GAGGGCAAACTGCGGACTCGCAAATGGCAGGACCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTCGTGGACAGCTT
CACAGGGGTGATGCAGATGCTGGGAGGAAGCGGGCAAAACGGAGGAGGGAAACAGCAAGCGGCAGGCAGCCAGCAAAGGC
CAACGCCACAGCCGGCGCAATCACCGGCCTACACCGAACCACCGATCGCTTATGACGACGATCTGCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.887

100

0.675
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.567
  ssb Neisseria gonorrhoeae MS11

40.678

100

0.459
  ssb Neisseria meningitidis MC58

40.678

100

0.459

Multiple sequence alignment