Detailed information NTG0267329

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C2U30_RS16950
• Genome accession: NZ_CP026122
• Coordinates: 3599500..3600375 (-)
• Length: 291 a.a.
• NCBI ID: WP_103244157.1
• Uniprot ID: -
• Organism: Aeromonas sp. ASNIH5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3594500..3605375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2U30_RS16925 (C2U30_16930)	-	3596247..3597431 (+)	1185	WP_103244155.1	tetratricopeptide repeat protein	-
C2U30_RS16930 (C2U30_16935)	mutT	3597440..3597844 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
C2U30_RS16935 (C2U30_16940)	yacG	3597902..3598096 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
C2U30_RS16940 (C2U30_16945)	zapD	3598107..3598829 (-)	723	WP_010675825.1	cell division protein ZapD	-
C2U30_RS16945 (C2U30_16950)	coaE	3598867..3599481 (-)	615	WP_103244156.1	dephospho-CoA kinase	-
C2U30_RS16950 (C2U30_16955)	pilD	3599500..3600375 (-)	876	WP_103244157.1	A24 family peptidase	Machinery gene
C2U30_RS16955 (C2U30_16960)	pilC	3600453..3601694 (-)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
C2U30_RS16960 (C2U30_16965)	pilB	3601822..3603528 (-)	1707	WP_041211787.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
C2U30_RS23110 (C2U30_16970)	-	3603528..3603917 (-)	390	WP_080989820.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
C2U30_RS16975 (C2U30_16980)	nadC	3604230..3605093 (-)	864	WP_103244158.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32041.14 Da
• Isoelectric Point: 6.8280

>NTDB_id=267329 C2U30_RS16950 WP_103244157.1 3599500..3600375(-) (pilD) [Aeromonas sp. ASNIH5]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVSLADAVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=267329 C2U30_RS16950 WP_103244157.1 3599500..3600375(-) (pilD) [Aeromonas sp. ASNIH5]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGTTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTTGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTTTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGTCCCTGGCCGATGCGGTGGT
CGGCGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTATTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ACGGCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTGGGATGGCAAGCATTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCTTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.111	98.969	0.605
pilD	Vibrio campbellii strain DS40M4	57.241	99.656	0.57
pilD	Acinetobacter baumannii D1279779	52.688	95.876	0.505
pilD	Acinetobacter nosocomialis M2	52.688	95.876	0.505
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46