Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HLI_RS11930 Genome accession   NZ_CP026118
Coordinates   2339802..2340299 (+) Length   165 a.a.
NCBI ID   WP_128525167.1    Uniprot ID   A0A410MDW6
Organism   Halobacillus litoralis strain ERB 031     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2334802..2345299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLI_RS11900 (HLI_12095) - 2335455..2336474 (+) 1020 WP_128525162.1 hypothetical protein -
  HLI_RS11905 (HLI_12100) - 2336576..2337436 (+) 861 WP_128526874.1 mechanosensitive ion channel family protein -
  HLI_RS11910 (HLI_12105) - 2337451..2337645 (+) 195 WP_128525163.1 DUF951 domain-containing protein -
  HLI_RS11915 (HLI_12110) - 2337688..2337885 (-) 198 WP_128525164.1 hypothetical protein -
  HLI_RS11920 (HLI_12115) ychF 2338262..2339359 (+) 1098 WP_128525165.1 redox-regulated ATPase YchF -
  HLI_RS11925 (HLI_12120) rpsF 2339496..2339789 (+) 294 WP_128525166.1 30S ribosomal protein S6 -
  HLI_RS11930 (HLI_12125) ssbA 2339802..2340299 (+) 498 WP_128525167.1 single-stranded DNA-binding protein Machinery gene
  HLI_RS11935 (HLI_12130) rpsR 2340321..2340548 (+) 228 WP_128525168.1 30S ribosomal protein S18 -
  HLI_RS11940 (HLI_12135) - 2340797..2341234 (-) 438 WP_128525169.1 Rrf2 family transcriptional regulator -
  HLI_RS11945 (HLI_12140) hmpA 2341411..2342637 (+) 1227 WP_128525170.1 NO-inducible flavohemoprotein -
  HLI_RS11950 (HLI_12145) - 2342709..2343341 (-) 633 WP_206659610.1 YitT family protein -
  HLI_RS11955 (HLI_12150) - 2343477..2345153 (-) 1677 WP_128525171.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17988.46 Da        Isoelectric Point: 4.4805

>NTDB_id=267281 HLI_RS11930 WP_128525167.1 2339802..2340299(+) (ssbA) [Halobacillus litoralis strain ERB 031]
MLNRVVLAGRLTKDPDLRYTPNGVAVANFTIAVNRPFSNNQGDRDADFINCVVWRRAAENLANFMSKGSLVGVDGRLQSR
SFDNQEGKRVFVTEVVADSVQFLESKGSSQGGGNRGGSGFQSNQNQQPSGNNFGSNNNDNNNQRNEDPFADNGEPIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=267281 HLI_RS11930 WP_128525167.1 2339802..2340299(+) (ssbA) [Halobacillus litoralis strain ERB 031]
ATGTTGAATCGTGTCGTATTAGCCGGCAGATTGACGAAGGATCCTGATTTACGCTATACGCCAAACGGAGTAGCCGTCGC
CAACTTTACAATCGCCGTCAACCGCCCATTTTCCAACAACCAGGGAGATCGCGATGCCGATTTCATCAACTGTGTTGTTT
GGAGACGAGCGGCTGAAAACTTAGCTAACTTTATGAGTAAAGGCAGTCTTGTCGGAGTCGATGGACGCTTACAGTCCCGA
AGCTTCGATAATCAGGAAGGCAAGCGTGTGTTTGTAACAGAAGTAGTTGCAGATAGCGTACAATTCCTAGAATCCAAAGG
TTCTTCCCAGGGCGGAGGAAATCGTGGAGGTTCAGGATTCCAATCAAATCAGAATCAACAACCATCAGGAAATAACTTCG
GTTCCAATAATAATGATAACAACAATCAACGAAATGAAGACCCATTCGCAGACAATGGGGAACCTATCGATATATCAGAT
GATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410MDW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.791

100

0.655
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.588
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

64.242

0.382
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.376

Multiple sequence alignment