Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LCU_RS07950 | Genome accession | NZ_CP026116 |
| Coordinates | 1518871..1519383 (-) | Length | 170 a.a. |
| NCBI ID | WP_004265848.1 | Uniprot ID | A0A0B2XPH3 |
| Organism | Latilactobacillus curvatus JCM 1096 = DSM 20019 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1513871..1524383
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCU_RS07930 (LCU_07945) | dnaB | 1514332..1515735 (-) | 1404 | WP_174795735.1 | replicative DNA helicase | - |
| LCU_RS07935 (LCU_07950) | rplI | 1515880..1516332 (-) | 453 | WP_004265788.1 | 50S ribosomal protein L9 | - |
| LCU_RS07940 (LCU_07955) | - | 1516354..1518384 (-) | 2031 | WP_054644315.1 | DHH family phosphoesterase | - |
| LCU_RS07945 (LCU_07960) | rpsR | 1518601..1518840 (-) | 240 | WP_004265822.1 | 30S ribosomal protein S18 | - |
| LCU_RS07950 (LCU_07965) | ssb | 1518871..1519383 (-) | 513 | WP_004265848.1 | single-stranded DNA-binding protein | Machinery gene |
| LCU_RS07955 (LCU_07970) | rpsF | 1519423..1519719 (-) | 297 | WP_004265809.1 | 30S ribosomal protein S6 | - |
| LCU_RS07960 (LCU_07975) | gyrA | 1519962..1522547 (-) | 2586 | WP_039098084.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18621.16 Da Isoelectric Point: 4.6856
>NTDB_id=267253 LCU_RS07950 WP_004265848.1 1518871..1519383(-) (ssb) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=267253 LCU_RS07950 WP_004265848.1 1518871..1519383(-) (ssb) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
97.059 |
100 |
0.971 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56 |
100 |
0.576 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
62.353 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
33.155 |
100 |
0.365 |