Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LCU_RS00455 Genome accession   NZ_CP026116
Coordinates   65060..66394 (+) Length   444 a.a.
NCBI ID   WP_100069772.1    Uniprot ID   -
Organism   Latilactobacillus curvatus JCM 1096 = DSM 20019     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 60060..71394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCU_RS00435 (LCU_00440) rny 60605..62167 (+) 1563 WP_056965963.1 ribonuclease Y -
  LCU_RS00440 (LCU_00445) hemH 62260..63118 (+) 859 Protein_50 ferrochelatase -
  LCU_RS00445 (LCU_00450) - 63228..64316 (+) 1089 WP_004270225.1 MraY family glycosyltransferase -
  LCU_RS00450 (LCU_00455) - 64341..65003 (-) 663 WP_004270231.1 YigZ family protein -
  LCU_RS00455 (LCU_00460) comFA 65060..66394 (+) 1335 WP_100069772.1 DEAD/DEAH box helicase Machinery gene
  LCU_RS00460 (LCU_00465) comFC 66538..67068 (+) 531 WP_148484979.1 ComF family protein Machinery gene
  LCU_RS00465 (LCU_00470) raiA 67194..67739 (+) 546 WP_004270226.1 ribosome-associated translation inhibitor RaiA -
  LCU_RS00470 (LCU_00475) secA 67968..70331 (+) 2364 WP_004270228.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 49808.01 Da        Isoelectric Point: 9.4775

>NTDB_id=267229 LCU_RS00455 WP_100069772.1 65060..66394(+) (comFA) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
MMAKQLAYGRQWSATQLSTVMNNYSLPQIKQRLAFQIVNQRLVCQRCGQVVKEQARLPDGRYYCAACLTFGRLVEGDQLV
YVPECNLFESIVEPLTWSGTLTPFQAQAAKQIVAVITKQQRHVLTAVTGAGKTEMLFQGIATALANGQRVCVAAPRVAVC
LELYPRLQAAFANTPIMLMHGEQTAPYRYTPLVVCTTHQLFKFYQAFDTVIVDEVDAFPFVNNPQLEMAVKQACKPCCAL
IYLTATPTVKLRHAINTGDLTGSELPIRFHGHLLPEPHCYPLFTWRRSVKRHQLPSVMRNLLRKCLQEQRLLLFVPQVRD
LEAVQQSVVRALPHITVNTVHAGDPNQLDKIAAFRAGCGDVLITTTVLERGVTFKNIAVFVLGAEHVVFTESVLVQIAGR
AGRQQEHAANPVYFFYADYTVAIQRACQQIKRQNRKGRRLQSTV

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=267229 LCU_RS00455 WP_100069772.1 65060..66394(+) (comFA) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
ATGATGGCAAAACAACTTGCTTATGGTCGTCAGTGGAGTGCCACCCAATTGAGTACCGTTATGAATAATTATAGTTTACC
ACAGATTAAACAGCGACTAGCGTTTCAAATAGTTAATCAGCGTCTGGTATGTCAACGGTGTGGACAAGTGGTGAAAGAGC
AAGCTCGCTTACCTGATGGTCGGTATTATTGTGCTGCTTGCTTGACCTTTGGGCGGTTAGTGGAAGGGGATCAGTTGGTT
TACGTGCCTGAATGCAATCTGTTTGAGTCGATCGTAGAACCGCTAACTTGGTCGGGGACACTAACCCCTTTTCAAGCACA
AGCCGCAAAGCAGATTGTTGCGGTCATTACCAAGCAACAACGCCATGTCTTAACTGCAGTGACCGGTGCTGGTAAAACTG
AGATGTTATTTCAAGGCATTGCGACGGCTTTAGCTAATGGGCAGCGTGTGTGTGTTGCTGCGCCGCGGGTGGCGGTTTGT
TTAGAACTCTATCCGCGCTTGCAAGCAGCGTTTGCTAACACACCAATCATGCTGATGCATGGGGAACAGACTGCGCCTTA
CCGGTATACGCCGTTAGTTGTTTGTACAACCCATCAGTTATTTAAGTTTTATCAGGCATTTGACACTGTCATTGTCGATG
AGGTTGATGCGTTCCCATTTGTCAATAATCCCCAGCTTGAGATGGCTGTTAAACAGGCGTGTAAGCCATGCTGTGCATTG
ATCTATCTGACGGCGACACCAACTGTAAAGTTGCGCCATGCGATTAATACAGGGGATTTAACGGGTAGTGAGCTACCAAT
TCGCTTTCATGGTCACTTATTACCTGAACCGCATTGCTATCCCTTGTTTACGTGGCGGCGTTCAGTTAAACGGCATCAGT
TACCATCCGTGATGCGCAACTTACTCAGGAAGTGTCTTCAAGAACAACGCTTATTATTATTTGTGCCACAGGTAAGGGAT
TTAGAGGCGGTTCAGCAGAGCGTTGTTCGGGCATTGCCACACATTACAGTGAACACGGTACATGCTGGCGATCCTAATCA
ATTAGACAAGATAGCGGCCTTTAGAGCAGGATGCGGGGACGTGCTGATTACGACGACAGTTCTAGAACGAGGCGTAACGT
TTAAAAATATTGCAGTGTTTGTTCTTGGTGCAGAACACGTGGTCTTCACTGAATCAGTGCTTGTACAGATTGCTGGCCGA
GCCGGACGACAGCAAGAGCATGCTGCCAATCCGGTTTATTTTTTCTACGCGGATTACACGGTCGCTATTCAGCGTGCGTG
TCAACAAATTAAACGACAAAATCGAAAAGGACGGCGATTACAATCCACTGTTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(101-248)

Helicase conserved C-terminal domain (Helicase_C)

(298-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

65.682

99.099

0.651
  comFA/cflA Streptococcus mitis NCTC 12261

40.796

90.541

0.369
  comFA/cflA Streptococcus pneumoniae TIGR4

40.594

90.991

0.369
  comFA/cflA Streptococcus pneumoniae Rx1

40.347

90.991

0.367
  comFA/cflA Streptococcus pneumoniae D39

40.347

90.991

0.367
  comFA/cflA Streptococcus pneumoniae R6

40.347

90.991

0.367
  comFA/cflA Streptococcus mitis SK321

40.099

90.991

0.365
  comFA Bacillus subtilis subsp. subtilis str. 168

38.554

93.468

0.36

Multiple sequence alignment