Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | LCU_RS00460 | Genome accession | NZ_CP026116 |
| Coordinates | 66538..67068 (+) | Length | 176 a.a. |
| NCBI ID | WP_148484979.1 | Uniprot ID | - |
| Organism | Latilactobacillus curvatus JCM 1096 = DSM 20019 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 61538..72068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCU_RS00440 (LCU_00445) | hemH | 62260..63118 (+) | 859 | Protein_50 | ferrochelatase | - |
| LCU_RS00445 (LCU_00450) | - | 63228..64316 (+) | 1089 | WP_004270225.1 | MraY family glycosyltransferase | - |
| LCU_RS00450 (LCU_00455) | - | 64341..65003 (-) | 663 | WP_004270231.1 | YigZ family protein | - |
| LCU_RS00455 (LCU_00460) | comFA | 65060..66394 (+) | 1335 | WP_100069772.1 | DEAD/DEAH box helicase | Machinery gene |
| LCU_RS00460 (LCU_00465) | comFC | 66538..67068 (+) | 531 | WP_148484979.1 | ComF family protein | Machinery gene |
| LCU_RS00465 (LCU_00470) | raiA | 67194..67739 (+) | 546 | WP_004270226.1 | ribosome-associated translation inhibitor RaiA | - |
| LCU_RS00470 (LCU_00475) | secA | 67968..70331 (+) | 2364 | WP_004270228.1 | preprotein translocase subunit SecA | - |
| LCU_RS00475 (LCU_00480) | prfB | 70403..71519 (+) | 1117 | WP_099048118.1 | peptide chain release factor 2 | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 20693.79 Da Isoelectric Point: 9.7337
>NTDB_id=267230 LCU_RS00460 WP_148484979.1 66538..67068(+) (comFC) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
MTTQGVCPDCQRWQQLYPGEQFTNRALLTYNEPMQQYFQRYKGQGDYRLRHVFQRLIRENFPVQRQTAYIPVPTDPTHLQ
SRGFNPVVGLYEDCFPLTPLLQKLPTEKGQAQKNRAERLATPQFFKCAQNVLLSSKVQQLILLDDIYTTGRTLWHAQQCL
RKRYQTLPIHAITLVH
MTTQGVCPDCQRWQQLYPGEQFTNRALLTYNEPMQQYFQRYKGQGDYRLRHVFQRLIRENFPVQRQTAYIPVPTDPTHLQ
SRGFNPVVGLYEDCFPLTPLLQKLPTEKGQAQKNRAERLATPQFFKCAQNVLLSSKVQQLILLDDIYTTGRTLWHAQQCL
RKRYQTLPIHAITLVH
Nucleotide
Download Length: 531 bp
>NTDB_id=267230 LCU_RS00460 WP_148484979.1 66538..67068(+) (comFC) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
ATGACAACCCAGGGGGTGTGTCCGGATTGCCAGAGATGGCAGCAACTGTATCCAGGCGAACAATTTACTAATCGAGCGTT
GTTAACATACAACGAACCAATGCAACAGTATTTTCAACGCTATAAGGGGCAGGGGGATTATCGATTACGTCACGTATTTC
AACGGCTGATTCGAGAAAATTTTCCTGTGCAACGGCAAACGGCGTATATCCCAGTCCCGACTGATCCAACACATTTGCAA
AGCCGCGGATTCAATCCGGTGGTTGGCTTATACGAGGACTGTTTTCCACTGACCCCATTGTTGCAGAAGCTACCAACTGA
AAAAGGACAAGCACAAAAAAATCGTGCAGAGCGCTTAGCAACGCCGCAATTTTTTAAATGCGCGCAGAACGTGCTGTTGA
GTTCCAAGGTGCAGCAGTTAATTTTGTTGGATGATATTTATACCACTGGGCGCACGTTATGGCATGCTCAGCAGTGTCTC
CGCAAGCGATACCAAACGCTGCCAATTCACGCAATTACTTTAGTCCACTAG
ATGACAACCCAGGGGGTGTGTCCGGATTGCCAGAGATGGCAGCAACTGTATCCAGGCGAACAATTTACTAATCGAGCGTT
GTTAACATACAACGAACCAATGCAACAGTATTTTCAACGCTATAAGGGGCAGGGGGATTATCGATTACGTCACGTATTTC
AACGGCTGATTCGAGAAAATTTTCCTGTGCAACGGCAAACGGCGTATATCCCAGTCCCGACTGATCCAACACATTTGCAA
AGCCGCGGATTCAATCCGGTGGTTGGCTTATACGAGGACTGTTTTCCACTGACCCCATTGTTGCAGAAGCTACCAACTGA
AAAAGGACAAGCACAAAAAAATCGTGCAGAGCGCTTAGCAACGCCGCAATTTTTTAAATGCGCGCAGAACGTGCTGTTGA
GTTCCAAGGTGCAGCAGTTAATTTTGTTGGATGATATTTATACCACTGGGCGCACGTTATGGCATGCTCAGCAGTGTCTC
CGCAAGCGATACCAAACGCTGCCAATTCACGCAATTACTTTAGTCCACTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Latilactobacillus sakei subsp. sakei 23K |
65.493 |
80.682 |
0.528 |