Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2H86_RS21425 Genome accession   NZ_CP026115
Coordinates   4709530..4710021 (-) Length   163 a.a.
NCBI ID   WP_159409709.1    Uniprot ID   A0A6I6XF79
Organism   Pseudomonas putida strain W5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4704530..4715021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H86_RS21400 (C2H86_07725) - 4704867..4705163 (+) 297 WP_159409704.1 hypothetical protein -
  C2H86_RS28600 - 4705686..4705925 (+) 240 WP_346266724.1 hypothetical protein -
  C2H86_RS21405 (C2H86_07745) - 4706431..4707063 (+) 633 WP_159409705.1 hypothetical protein -
  C2H86_RS21410 (C2H86_07760) - 4707676..4707963 (+) 288 WP_159409706.1 hypothetical protein -
  C2H86_RS21415 (C2H86_07765) - 4708015..4708566 (-) 552 WP_159409707.1 hypothetical protein -
  C2H86_RS21420 (C2H86_07770) - 4708684..4709340 (+) 657 WP_159409708.1 hypothetical protein -
  C2H86_RS21425 (C2H86_07775) ssb 4709530..4710021 (-) 492 WP_159409709.1 single-stranded DNA-binding protein Machinery gene
  C2H86_RS21430 (C2H86_07780) - 4710018..4710356 (-) 339 WP_159409710.1 hypothetical protein -
  C2H86_RS21435 (C2H86_07785) - 4710376..4710759 (-) 384 WP_159409711.1 helix-turn-helix transcriptional regulator -
  C2H86_RS21440 (C2H86_07790) - 4711426..4711674 (-) 249 WP_159409712.1 DUF1654 domain-containing protein -
  C2H86_RS21445 (C2H86_07795) - 4711842..4712498 (-) 657 WP_159412969.1 LexA family transcriptional regulator -
  C2H86_RS21450 (C2H86_07800) - 4712604..4712834 (+) 231 WP_159409713.1 YdaS family helix-turn-helix protein -
  C2H86_RS21455 (C2H86_07805) - 4713016..4713828 (+) 813 WP_240349618.1 replication protein -
  C2H86_RS21460 (C2H86_07810) - 4713818..4714627 (+) 810 WP_159409715.1 ATP-binding protein -
  C2H86_RS21465 (C2H86_07815) - 4714630..4714926 (+) 297 WP_159409716.1 DUF1364 domain-containing protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18163.29 Da        Isoelectric Point: 7.2442

>NTDB_id=267226 C2H86_RS21425 WP_159409709.1 4709530..4710021(-) (ssb) [Pseudomonas putida strain W5]
MSRGVNKVILVGTCGQDPDVRYLPNGNAVTNLSLATSEQWTDKRSGEKVERTEWHRVSLLGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGSRPQGQQPGQVPDRQPQQRRAAPQQQNQQAAPPDSFDDDIPFAPAHHL
TGA

Nucleotide


Download         Length: 492 bp        

>NTDB_id=267226 C2H86_RS21425 WP_159409709.1 4709530..4710021(-) (ssb) [Pseudomonas putida strain W5]
ATGAGCCGCGGGGTAAACAAGGTCATCCTGGTCGGCACCTGCGGCCAGGACCCGGACGTGCGCTACCTGCCCAACGGCAA
CGCTGTGACCAACCTCAGCCTAGCCACCAGCGAGCAGTGGACGGACAAACGCTCGGGCGAGAAGGTCGAGCGGACCGAGT
GGCACCGGGTGTCGCTGCTCGGCAAGGTCGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCCCAGTGCTACATCGAG
GGAAAGCTGCAGACCCGCGAGTGGGAGAAGGACGGCATCAAGCGGTACACCACGGAAATCATCGTCGACATAAACGGCAC
GATGCAGCTGTTGGGCAGCCGACCGCAGGGCCAGCAACCAGGCCAAGTTCCAGACCGGCAACCTCAACAGCGGCGGGCCG
CGCCACAGCAGCAGAACCAGCAGGCCGCGCCGCCTGACAGCTTCGACGACGACATTCCGTTCGCCCCGGCGCACCACCTT
ACGGGGGCGTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.143

100

0.613
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.515
  ssb Neisseria gonorrhoeae MS11

44.886

100

0.485
  ssb Neisseria meningitidis MC58

43.75

100

0.472

Multiple sequence alignment