Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C2H86_RS19355 Genome accession   NZ_CP026115
Coordinates   4250590..4252806 (+) Length   738 a.a.
NCBI ID   WP_159409397.1    Uniprot ID   A0A6I6XX26
Organism   Pseudomonas putida strain W5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4245590..4257806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H86_RS19335 (C2H86_05660) - 4247472..4248095 (+) 624 WP_159409394.1 glutathione S-transferase -
  C2H86_RS19340 (C2H86_05665) - 4248229..4249161 (+) 933 WP_159409395.1 ABC transporter ATP-binding protein -
  C2H86_RS19345 (C2H86_05670) - 4249158..4249937 (+) 780 WP_103449696.1 ABC transporter permease -
  C2H86_RS19350 (C2H86_05675) - 4249821..4250447 (-) 627 WP_159409396.1 DUF2062 domain-containing protein -
  C2H86_RS19355 (C2H86_05680) comA 4250590..4252806 (+) 2217 WP_159409397.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C2H86_RS19360 (C2H86_05685) exbB 4252923..4253558 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C2H86_RS19365 (C2H86_05690) - 4253555..4253989 (+) 435 WP_159409398.1 biopolymer transporter ExbD -
  C2H86_RS19370 (C2H86_05695) lpxK 4253989..4254990 (+) 1002 WP_159409399.1 tetraacyldisaccharide 4'-kinase -
  C2H86_RS19375 (C2H86_05700) - 4255034..4255219 (+) 186 WP_003247142.1 Trm112 family protein -
  C2H86_RS19380 (C2H86_05705) kdsB 4255216..4255980 (+) 765 WP_159409400.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C2H86_RS19385 (C2H86_05710) - 4255980..4256444 (+) 465 WP_159409401.1 low molecular weight protein-tyrosine-phosphatase -
  C2H86_RS19390 (C2H86_05715) murB 4256441..4257460 (+) 1020 WP_159409402.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79723.71 Da        Isoelectric Point: 9.2357

>NTDB_id=267222 C2H86_RS19355 WP_159409397.1 4250590..4252806(+) (comA) [Pseudomonas putida strain W5]
MRTGMFALALGLMCLGFLPVLPSVGWLLLLLLGGGICAGTRLWPLGCFLLGLCWACWSAQQALDDRLAASLDGRTLWLEG
RVVGLPTRTAQGMRFELEQAHSRRAELPRRLQLSWFDGPVMHAGEQWRMAVTLQRPAGLLNPHGPDREALLLARRIGATG
TVKAGQLMHAVAPGWRDALRERLLKVDAQGQEAALVALVLGDGAGLAREQWQTLQATGTVHLLVISGQHIGLLAGLLYAL
VAGLARWGLWPRGWPWLPWACGLALAGALSYGWLAGAGVSVQRACLMLAVVLLWRLRFRQLGAVLPLLLALNLVLLVEPL
AALLPGFWLSFAAVAILIYSFAARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPAANLLAVPWVSLAVLPLAL
LGTLLLPLAGIGEGLLWGAGGLLDLLFHLLGLLAQWRPAWIPPALPVWAWLLVCCGALLLLLPRGVPLRGLGGVMLLALW
VPKAPVPHGQVEIWQLDVGQGLAMLLRTQHHTLLYDAGPAKGETDLGERVVLPTLRKLGVDRLDLMLISHAHADHAGGAA
AIQRGLPIGRIVGGEALGDVQLQPCSSGEQWTWDGVHFSLWHWVDGQSSNDRSCVLMVEAQGERMLLAGDMEAGAERAWL
VDTAAPRVDWLQAPHHGSRTSSTEAFIRATAARGVLISRGRNNSFGHPHAQVVERYRRHGLVVHDTAVEGALRVVLGGQG
EVESMRRQRRFWRDVGDG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=267222 C2H86_RS19355 WP_159409397.1 4250590..4252806(+) (comA) [Pseudomonas putida strain W5]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGTCTGATGTGCCTGGGCTTTCTCCCCGTTTTGCCGTCGGTCGGGTGGCT
GCTTTTGCTGCTGCTGGGCGGTGGCATCTGCGCGGGCACCCGGTTGTGGCCGCTGGGTTGTTTTCTGCTGGGGCTGTGCT
GGGCCTGCTGGTCGGCACAGCAGGCGCTGGATGACCGCCTGGCAGCGAGCCTGGATGGCCGCACGCTATGGCTGGAGGGG
AGGGTGGTCGGGCTGCCTACGCGGACTGCACAGGGCATGCGCTTCGAGCTGGAGCAAGCGCATTCGCGCCGCGCCGAGCT
GCCCCGGCGCCTGCAACTGAGCTGGTTCGATGGCCCGGTCATGCATGCTGGCGAGCAGTGGCGCATGGCAGTCACCTTGC
AGCGCCCGGCTGGGTTGCTCAACCCCCATGGCCCGGATCGCGAGGCGCTGCTGCTGGCCCGACGCATCGGTGCCACTGGC
ACGGTAAAGGCCGGCCAGCTCATGCACGCGGTGGCCCCGGGGTGGCGGGATGCGCTGCGCGAGCGGCTGCTCAAGGTCGA
TGCGCAGGGGCAGGAAGCGGCATTGGTGGCTTTGGTGCTCGGCGATGGGGCGGGCTTGGCCCGTGAGCAGTGGCAGACGT
TGCAGGCAACCGGCACGGTGCACCTGCTGGTGATTTCCGGGCAGCACATTGGTCTGCTCGCGGGCTTGCTGTATGCCCTG
GTCGCGGGCCTGGCGCGCTGGGGGCTCTGGCCGCGGGGTTGGCCGTGGTTGCCGTGGGCCTGCGGCCTGGCGTTGGCGGG
GGCACTGAGCTACGGCTGGTTGGCCGGTGCGGGAGTATCGGTGCAACGCGCCTGCCTGATGCTGGCGGTGGTGCTGCTGT
GGCGCCTGCGTTTTCGCCAGCTGGGGGCGGTGTTGCCACTGTTGCTGGCATTGAACCTGGTGTTGCTGGTCGAACCCTTG
GCGGCGTTGCTCCCTGGTTTCTGGCTATCGTTCGCGGCGGTGGCGATCCTTATCTACAGCTTTGCGGCACGGCTCGGCGG
CTGGCGACCCTGGCAGGCGTGGACGCGAGCCCAGTGGGTGATCGCCGTCGGTCTGTTGCCGGTGCTATTGGCTACGGGGT
TGCCGGTCAGCCTGAGTGCGCCTGCAGCGAACTTGCTGGCGGTGCCCTGGGTCAGCCTGGCTGTGCTGCCACTGGCGTTG
CTCGGTACGTTGTTGCTGCCGCTGGCCGGCATTGGCGAGGGCCTGCTGTGGGGCGCAGGTGGTTTGCTGGACCTCCTGTT
CCACCTGCTGGGTTTGCTGGCGCAGTGGCGGCCGGCATGGATACCGCCGGCACTGCCGGTGTGGGCCTGGTTGCTGGTGT
GTTGCGGGGCGCTGCTGTTGCTGTTGCCTCGCGGTGTGCCGCTGCGTGGCCTGGGCGGGGTCATGCTGTTGGCCTTGTGG
GTGCCGAAGGCGCCCGTGCCCCATGGGCAGGTCGAGATCTGGCAGCTGGACGTCGGCCAAGGCTTGGCGATGCTGTTACG
CACGCAGCATCACACCCTGCTGTACGACGCCGGGCCGGCCAAGGGCGAAACCGATCTGGGCGAGCGGGTGGTGCTGCCAA
CCCTGCGCAAGCTGGGGGTGGATCGCCTGGACCTGATGCTGATCAGCCACGCCCATGCCGACCATGCCGGCGGCGCTGCG
GCCATCCAGCGAGGCTTGCCGATCGGTCGGATAGTTGGCGGTGAGGCACTGGGTGACGTTCAGTTGCAACCTTGTAGCAG
TGGCGAGCAATGGACATGGGATGGCGTGCATTTTTCGCTATGGCACTGGGTGGATGGGCAAAGTAGCAACGACCGCTCCT
GTGTGCTGATGGTCGAGGCGCAAGGCGAGCGGATGTTGCTGGCGGGGGATATGGAGGCTGGCGCCGAGCGGGCTTGGCTG
GTGGACACCGCTGCACCCCGTGTCGACTGGCTGCAGGCGCCGCACCATGGCAGCCGTACGTCTTCCACCGAGGCGTTCAT
CCGCGCTACGGCTGCACGTGGCGTGCTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCATGCACAGGTGGTCG
AGCGTTATCGGCGGCATGGGCTGGTTGTTCACGACACGGCGGTGGAGGGGGCGTTGCGCGTGGTGTTGGGTGGACAGGGG
GAGGTTGAAAGTATGCGCCGGCAGCGACGTTTCTGGCGTGATGTAGGCGATGGCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-671)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6XX26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

57.58

97.425

0.561
  comA Ralstonia pseudosolanacearum GMI1000

34.994

100

0.371

Multiple sequence alignment