Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C2H86_RS19360 Genome accession   NZ_CP026115
Coordinates   4252923..4253558 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas putida strain W5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4247923..4258558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H86_RS19340 (C2H86_05665) - 4248229..4249161 (+) 933 WP_159409395.1 ABC transporter ATP-binding protein -
  C2H86_RS19345 (C2H86_05670) - 4249158..4249937 (+) 780 WP_103449696.1 ABC transporter permease -
  C2H86_RS19350 (C2H86_05675) - 4249821..4250447 (-) 627 WP_159409396.1 DUF2062 domain-containing protein -
  C2H86_RS19355 (C2H86_05680) comA 4250590..4252806 (+) 2217 WP_159409397.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C2H86_RS19360 (C2H86_05685) exbB 4252923..4253558 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C2H86_RS19365 (C2H86_05690) - 4253555..4253989 (+) 435 WP_159409398.1 biopolymer transporter ExbD -
  C2H86_RS19370 (C2H86_05695) lpxK 4253989..4254990 (+) 1002 WP_159409399.1 tetraacyldisaccharide 4'-kinase -
  C2H86_RS19375 (C2H86_05700) - 4255034..4255219 (+) 186 WP_003247142.1 Trm112 family protein -
  C2H86_RS19380 (C2H86_05705) kdsB 4255216..4255980 (+) 765 WP_159409400.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C2H86_RS19385 (C2H86_05710) - 4255980..4256444 (+) 465 WP_159409401.1 low molecular weight protein-tyrosine-phosphatase -
  C2H86_RS19390 (C2H86_05715) murB 4256441..4257460 (+) 1020 WP_159409402.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=267223 C2H86_RS19360 WP_016391244.1 4252923..4253558(+) (exbB) [Pseudomonas putida strain W5]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=267223 C2H86_RS19360 WP_016391244.1 4252923..4253558(+) (exbB) [Pseudomonas putida strain W5]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACACTGCGCGCCAGCCGCGTCACCCCGCCGCATCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCTTGCGCGCCGACTCGCCGCTGGGCGAAATTCTTGCGGCGGGCCTGGCCAAC
TCGCGCCACGGTCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAACTCGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCACCGCTGCTCGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGCGGTATCTCCAAGGCCCTGGTCACCACTGCA
GCGGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment