Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2H86_RS14640 Genome accession   NZ_CP026115
Coordinates   3227609..3228151 (+) Length   180 a.a.
NCBI ID   WP_085677073.1    Uniprot ID   -
Organism   Pseudomonas putida strain W5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3222609..3233151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H86_RS14625 (C2H86_00915) bfr 3222704..3223168 (+) 465 WP_003257116.1 bacterioferritin -
  C2H86_RS14630 (C2H86_00920) uvrA 3223241..3226075 (-) 2835 WP_163985969.1 excinuclease ABC subunit UvrA -
  C2H86_RS14635 (C2H86_00925) - 3226205..3227599 (+) 1395 WP_103448766.1 MFS transporter -
  C2H86_RS14640 (C2H86_00930) ssb 3227609..3228151 (+) 543 WP_085677073.1 single-stranded DNA-binding protein Machinery gene
  C2H86_RS14645 (C2H86_00935) - 3228232..3229632 (-) 1401 WP_159408684.1 PLP-dependent aminotransferase family protein -
  C2H86_RS14650 (C2H86_00940) - 3230058..3231083 (+) 1026 WP_159408685.1 TauD/TfdA family dioxygenase -
  C2H86_RS14655 (C2H86_00945) - 3231116..3231901 (+) 786 WP_099814604.1 TSUP family transporter -
  C2H86_RS14660 (C2H86_00950) - 3231924..3232685 (+) 762 WP_159408686.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20019.10 Da        Isoelectric Point: 5.9286

>NTDB_id=267220 C2H86_RS14640 WP_085677073.1 3227609..3228151(+) (ssb) [Pseudomonas putida strain W5]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQQQRPAP
QQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=267220 C2H86_RS14640 WP_085677073.1 3227609..3228151(+) (ssb) [Pseudomonas putida strain W5]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTACCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGTGACCCATACAACCAGGGTGGCGGCAACTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCTCCGCCACGCCAGCAGGCTCAGCGCCCGCAGCAGCAACAGCGTCCGGCGCCA
CAGCAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.143

100

0.578
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.087

100

0.489
  ssb Neisseria meningitidis MC58

47.541

100

0.483

Multiple sequence alignment