Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C2H86_RS09825 Genome accession   NZ_CP026115
Coordinates   2144184..2144573 (-) Length   129 a.a.
NCBI ID   WP_159412403.1    Uniprot ID   A0A6I6Y559
Organism   Pseudomonas putida strain W5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2139184..2149573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H86_RS09810 (C2H86_24470) - 2141137..2143161 (-) 2025 WP_240349713.1 methyl-accepting chemotaxis protein -
  C2H86_RS09815 (C2H86_24475) - 2143209..2143763 (-) 555 WP_159412402.1 chemotaxis protein CheW -
  C2H86_RS09820 (C2H86_24480) pilH 2143760..2144125 (-) 366 WP_060509717.1 twitching motility response regulator PilH -
  C2H86_RS09825 (C2H86_24485) pilG 2144184..2144573 (-) 390 WP_159412403.1 twitching motility response regulator PilG Regulator
  C2H86_RS09830 (C2H86_24490) gshB 2144769..2145722 (+) 954 WP_159412404.1 glutathione synthase -
  C2H86_RS09835 (C2H86_24495) - 2145814..2146719 (+) 906 WP_159412405.1 energy transducer TonB -
  C2H86_RS09840 (C2H86_24500) - 2146849..2147418 (+) 570 WP_159412406.1 YqgE/AlgH family protein -
  C2H86_RS09845 (C2H86_24505) ruvX 2147418..2147843 (+) 426 WP_159412407.1 Holliday junction resolvase RuvX -
  C2H86_RS09850 (C2H86_24510) pyrR 2147904..2148422 (+) 519 WP_159412408.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  C2H86_RS09855 (C2H86_24515) - 2148436..2149440 (+) 1005 WP_016395343.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14237.50 Da        Isoelectric Point: 5.6468

>NTDB_id=267211 C2H86_RS09825 WP_159412403.1 2144184..2144573(-) (pilG) [Pseudomonas putida strain W5]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIIDHQPQIIFVDVLMPRLDGYQTCAVIKHNSAFKDIP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPE

Nucleotide


Download         Length: 390 bp        

>NTDB_id=267211 C2H86_RS09825 WP_159412403.1 2144184..2144573(-) (pilG) [Pseudomonas putida strain W5]
ATGGAACAGCCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGCGAAGC
GGGCTGCGAGGTGATCACCGCCAGTGACGGCTTCGATGCCCTGGCCAAGATCATCGACCACCAGCCACAGATCATCTTCG
TCGACGTGCTGATGCCCCGTCTGGACGGTTATCAGACCTGCGCGGTGATCAAGCACAACAGTGCCTTCAAGGACATCCCG
GTGATTCTTCTGTCGTCTCGCGACGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGCTCCGACCAGTTCCTGACCAA
ACCATTCAGCAAGGAAGAACTGCTCGACGCGATCAGGGCCCATGTGCCTGGTTTCGCCGCGCCCGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6Y559

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.833

93.023

0.659

Multiple sequence alignment