Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   C2U64_RS19915 Genome accession   NZ_CP026089
Coordinates   3840602..3841735 (+) Length   377 a.a.
NCBI ID   WP_068525560.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WCHAP005069     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3835602..3846735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U64_RS19890 (C2U64_19880) - 3835858..3836064 (-) 207 WP_002114054.1 hypothetical protein -
  C2U64_RS19895 (C2U64_19885) oprC 3836118..3838232 (-) 2115 WP_002114079.1 TonB-dependent copper receptor -
  C2U64_RS19900 (C2U64_19890) - 3838305..3838730 (-) 426 WP_002114087.1 DUF2946 family protein -
  C2U64_RS19905 (C2U64_19895) def 3838774..3839304 (-) 531 WP_002114101.1 peptide deformylase -
  C2U64_RS19910 (C2U64_19900) tsaP 3839427..3840581 (+) 1155 WP_002114134.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  C2U64_RS19915 (C2U64_19905) dprA 3840602..3841735 (+) 1134 WP_068525560.1 DNA-processing protein DprA Machinery gene
  C2U64_RS19920 (C2U64_19910) yrdC 3841787..3842356 (+) 570 WP_002114056.1 L-threonylcarbamoyladenylate synthase -
  C2U64_RS19925 (C2U64_19915) - 3842749..3843669 (-) 921 WP_002114137.1 DMT family transporter -
  C2U64_RS19930 (C2U64_19920) - 3843773..3844426 (-) 654 WP_078210243.1 TetR/AcrR family transcriptional regulator -
  C2U64_RS19935 (C2U64_19925) nepI 3844562..3845776 (+) 1215 WP_002114107.1 MFS transporter -
  C2U64_RS19940 (C2U64_19930) yeaM 3845798..3846562 (+) 765 WP_002114047.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41980.58 Da        Isoelectric Point: 6.7197

>NTDB_id=267042 C2U64_RS19915 WP_068525560.1 3840602..3841735(+) (dprA) [Acinetobacter pittii strain WCHAP005069]
MLTQLYSHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKAVQPAELSQWRNLGLHANHLKRVDEFQTAQGQAQFKKLTEQI
QQYTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLNSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=267042 C2U64_RS19915 WP_068525560.1 3840602..3841735(+) (dprA) [Acinetobacter pittii strain WCHAP005069]
ATGCTTACTCAACTTTATTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGAATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTAAAAAACTAACTGAGCAAATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAGTTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGTCAGGCACAAGCCCTATTACAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTGGCATATGGG
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAAACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCGATTATTACTGAGTTTTTGCCTGGGACAC
CTCCACTACAACAGCATTTCCCACGTAGAAACCGAATTGTTAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACTCAGTGGCAAAGTCAGCAACAAAACTCCACCGAGGAGGCTGTAGTTTCTAGTACCCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.186

100

0.902

  dprA Acinetobacter baumannii strain A118

89.655

100

0.897

  dprA Acinetobacter baylyi ADP1

70.604

100

0.714

  dprA Vibrio cholerae strain A1552

43.228

92.042

0.398


Multiple sequence alignment